Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1642 ATGGTTATTGGTAATTTCACTTCCATTATCAAGGAAATATATAAGAGAGGGGCTAGGAAATTTGCATTCATGAACTTACCACCCTTAAATAGTCTTCCACGCATCAAAATAGTTGAGTCAACCGAAGGAGGTGGTTGCTGCTTGAAAGAACTTCCCTCCCTAGTTAGCTTACATAATCAAGCTCTACCTATGGTTCTGTTCCATTTAGAGAAGCAACTAAAAGGCTTCAAATTTTCTCTATATGATATCAACGCTGATCTCACTCAAATGATCAATCATCCCTCGAAATATGCATGTTGTGGAAGTGGTTTATTTAGAGGAGAATACAGTTGTGGGGGCAAAAGAGGGCAAAAGTACTTCGAGTTATGTGACAAGCCTAGTGAATATTTATTTTGGGATGCTTTCCATCCTACAGAAAGTGCTTACAAACAATTGGCAGCTCGAATCAAGATCGATTGTATAACCAACAAGCACGTTGCCTTGTTCATTTTTGGTGATTCAATCTTAGATGCAGGAAATAACAATTACATCAATACTACAACCTTTGGTCAAGCGAATTTCTTGCCATATGGAGAAACCTACTTCAAGTTCCCAACGGGAAGGTTCTGTGATGGTCGGTTGATATCAGATTTTATTGGTAAGATTCAATTTATTCCACCATTTCAACAACCTGGCCTTACTCAATTCGAAAGTGGGGTGAATTTTGCCTCTGGTGGAGCAGGTGCTCTTGTTGAATCTTTTCAAGGCTTGGTAATACCCTTCGAAACGCAAGCAATAAACTTCAAGAAAGTAGCAGTTTCGTTGAGGCGCAAGTTAGGCAGCTCTGAAGCTAAAACATTGTTATCAAATGCTGTCTACATGTTTAGCATTGGATCTAATGATTATATGAGCCCGGTCTTAACTGGTTCTGATGTTCTCAAATCTTACTCTCATTCAGAATATGTTGGCATGGTTGTTGGTAATTTCACTTCCATTATCAAGGAAATATATAAGAGAGGGGCTAGAAAATTTGCATTCATAAACTTACCACCCTTAAATAGTCTTCCAGTCATGAAAATGGTTGAGTCAACTAAAGGAGGTGGTTGCTGCTTGAAAGAACTTCCTTCCCTAGTTAGCTTACATAATCAAGCTCTATCTATGGTTCTGTTACAGTTAGAGAAGCAACTAAAAGGCTTTAAATTTTCTCTATATGATATCAACGCTGATCTCACTCAAATGATCAATCATCCCTCGCGATATGGTTTGAAGGAAGGAAAATCAGCATGCAGTGGAAGTGGATTATTTAGAGGAGAATACAGTTGTGGGGGCAAAAGAGGGCAAAAGTACTTCGAGTTATGTGACAAGCCTAGTGAATATTTATTTTGGGATGCTTTCCATCCTACAGAAAGTGCTTACAAACAATTGGCAGCTCGAATGTGGGGCTCTCCAATAAGCTCTCACACTCACAATATAGGGCCTTATACAATCAAAGACCTCTTCCAAGCCCAATGA 1491 0.3903 MVIGNFTSIIKEIYKRGARKFAFMNLPPLNSLPRIKIVESTEGGGCCLKELPSLVSLHNQALPMVLFHLEKQLKGFKFSLYDINADLTQMINHPSKYACCGSGLFRGEYSCGGKRGQKYFELCDKPSEYLFWDAFHPTESAYKQLAARIKIDCITNKHVALFIFGDSILDAGNNNYINTTTFGQANFLPYGETYFKFPTGRFCDGRLISDFIGKIQFIPPFQQPGLTQFESGVNFASGGAGALVESFQGLVIPFETQAINFKKVAVSLRRKLGSSEAKTLLSNAVYMFSIGSNDYMSPVLTGSDVLKSYSHSEYVGMVVGNFTSIIKEIYKRGARKFAFINLPPLNSLPVMKMVESTKGGGCCLKELPSLVSLHNQALSMVLLQLEKQLKGFKFSLYDINADLTQMINHPSRYGLKEGKSACSGSGLFRGEYSCGGKRGQKYFELCDKPSEYLFWDAFHPTESAYKQLAARMWGSPISSHTHNIGPYTIKDLFQAQ* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1642 496 Gene3D SGNH hydrolase 155 476 IPR036514 -
Lja3g1642 496 Gene3D SGNH hydrolase 1 151 IPR036514 -
Lja3g1642 496 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 154 494 IPR044552 -
Lja3g1642 496 PANTHER GDSL ESTERASE/LIPASE 5 154 494 - -
Lja3g1642 496 PANTHER GDSL ESTERASE/LIPASE 5 1 149 - -
Lja3g1642 496 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 161 172 IPR008265 GO:0006629|GO:0016298
Lja3g1642 496 Pfam GDSL-like Lipase/Acylhydrolase 161 470 IPR001087 GO:0016788
Lja3g1642 496 Pfam GDSL-like Lipase/Acylhydrolase 5 148 IPR001087 GO:0016788
Lja3g1642 496 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 149 IPR044552 -
Lja3g1642 496 SUPERFAMILY SGNH hydrolase 161 473 - -
Lja3g1642 496 CDD SGNH_plant_lipase_like 160 476 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1642 Lja-Chr3 18118516 18126920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1642 160 473 Acyl Lipid Metabolism Gene Families AT4G10950 29.412 1.54e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1642 - - gmx:100819379 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1642 3 18118516 18126920 Lja3g1642 3 18118516 18126920 ECH