Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1637 ATGAACGGAACTGGTGACTTGTTCAATGCTGCAGTTAACAATCTGTTGAATTTTCCTGAAACCATGGAAAAGCTAATGTTTCCTTCTAGAGGACATGACAATCAAGAGAACAGAGGAGGAGTTTCTAGTATACCAGTGGATATTTTGGACACTCCCAAAGAGTATGTGTTCTTCATGGATGTTCCTGGTCTATCCAAGTCTGAAATTCAGGTTACTATTGAAGATGAAAATACTCTTGTGATAAGGAGCAATGGGAAGAGGAAACGTCAAGATAGTGAAGATGAAGGGTGCAAGTATCTTAGGCTGGAGAGGAGAGGGCCTCAGAATTTGCTGAGGAAGTTTCGTTTGCCTGAGAATGCAAATGTGTCAGCTATCACAGCAAAAAGTGAAAATGGGGTTCTCACTGTGGTTGTAGAGAAGCTGCCTCCACCTCAAAAATCCAAAACAGTTGAAGTTGCAATAGCCTGA 468 0.4167 MNGTGDLFNAAVNNLLNFPETMEKLMFPSRGHDNQENRGGVSSIPVDILDTPKEYVFFMDVPGLSKSEIQVTIEDENTLVIRSNGKRKRQDSEDEGCKYLRLERRGPQNLLRKFRLPENANVSAITAKSENGVLTVVVEKLPPPQKSKTVEVAIA* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1637 155 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 37 155 IPR002068 -
Lja3g1637 155 SUPERFAMILY HSP20-like chaperones 38 147 IPR008978 -
Lja3g1637 155 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 9 155 - -
Lja3g1637 155 CDD ACD_sHsps-like 47 140 - -
Lja3g1637 155 Pfam Hsp20/alpha crystallin family 47 152 IPR002068 -
Lja3g1637 155 Gene3D - 6 154 IPR008978 -
Lja3g1637 155 PANTHER 17.4 KDA CLASS III HEAT SHOCK PROTEIN 9 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1637 Lja-Chr3 18062793 18063685 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1637 K13993 - gmx:100803161 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1637 3 18062793 18063685 Lja3g1637 3 18062793 18063685 ECH