Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1617 ATGGAAGACTACGAAATGGCAATGGATTCTTCTCCCTCACCCAGCTACTTCGACCCACAAGACCTCACCACTCGCCAGCAGTTCCGCCGTTACGGGAAGAGGCACTCAACTTCAGGTGCTTCAATCCAACAAGACAACTCGGCGTCCAAGTTAAGTCAAACGGGGCTGTTTTATGACGGACAAAGCATCCATAGTCCTACAAATGCCGCACTTGTTCTTGAAAATATTAAACAAGAGGTGGAGAGTCTTGATGCTGATTACTTGGAAGAAAGGGCACAACATTCCTCTAGAAGGAGGTTATCCGCCGATGCTCATGGAGTCCCTGGTATGGATGCTGGTTTTTACTCTGAACGCCACTCATTAAAGGCGTGTAAGCAAGAGGATGAATCTGTAGGAGACGGTGCAGAAACAGTATTTACGTTATATGCATCTCTGCTTGATTCTGCTTTGCAAGGATTCATGCCTATTCCTGATCTGATACTAAGATTCGAGAATGCATGTCGAGATGTTTCAGAGTCTATCAGGTATGGTTTGAACGTTAGGCACCGAGTTGTTGAGGACAAATTAATGAGGCAGAAGGCTCAGCTCCTGCTTGATGAGGCGGCAACATGGTCTCTCTTGTGGTTCCTTTACGGCAAAGGAAATATATCACTAACCTTAGATGTTCAGTATTTTAAGAATTTATTATGTCTCTGTCCGCAGTTGTGCTATGACATCTGGTTTTTCAAGTGTATTTCCTTCTTTATACTGATCCTTACCCTTCTCATTGACGAACTTTACACTAGGGATGTGACTGAAGAACTATCTAAAGAGAAAATACTGGTGTCAGATACCTCACACGTAGTGGCATGTGAGTTTGTTGCAGAGGACCATGCAGCTCAATTGTTCCTTCGAATAGTCCAGTGGTTAGAAGGTTTGGCTTCTAAAGCACTTGATTTGGAAGTGAAGGTGCGTGGATCTCATGTTGGTAGTTATCTCCCCAACAGTGGAGTTTGGCATCACACTCAACGCTATCTAAAGAAAGGAACTTCTGACATGAACATTGTTCATCACCTCGACTTTGATGCTCCAACTCGTGAAAATGCAAATCTTTTGCCTGATGACAAAAAACAAGATGAATCTCTTCTAGAAGATGTATGGACTCTTTTAAGGGCTGGTAGGCTAGAAGAGGCATGTGGACTTTGCCGGTCTGCTGGACAGCCCTGGAGAGCTGCTTCTCTATGCCCTTTTGGAGGTTTGAGTCAGTTTCCTTCTGTTGAAGCTCTGGTGAAGAATGGTAAAAATAGAACTTTGCAAGCTGTTGAATTTGAAAGTGGCATTGGTCATCAGTGGCATCTTTGGAAATGGGCTTCATACTGTGCGTCAGAGAAAATAGCAGAGCAAGGTGGGAAATATGAAGCGGCTGTGTATGGAGCCCAATGTAGCAACCTAAAAAGGATGCTTCCACTCTGCACAGACTGGGAGTCAGCATGCTGGGCAATGGCAAAGTCTTGGCTAGATGTTCAGGTAGACATGGAGGTTACTCGCTCACTACCAGGGGGAGTTGATCAACTTAGAGCTTTTGGAGATGTAATTGACGGAAGCCACGGACATGTTGATGGCTCCCTTGAGCCTTCAAATGGACCTGAAAATTGGCCAATTCAAGTGTTGAATCAGCAACCACGACAACTTTCATCTCTTCTTCAAAAACTTCATTCAGGGGAAATGATCTATGAAACTGTTACCCGACAATGCAAGGAGCAACAGCGGCAAATTCAGATGACTCTAATGCTAGGGGACATACCACGTGTACTAGACCTTATATGGTCATGGATAGCACCTTCCGACGATGATCAGAATGTATTTAGGCCTCATGGAGATCCTCAAATGATACGATTTGGTGCACATCTAGTCCTCGTGCTTAGATATTTAATTGCTGATGAAATAAAGGGCGCCTTCATGGACAAGATTATGAGTGTTGGTGATCATATTCTTCACATGTATGCTATGTTTCTCTTTTCAAAGGAGCACGAGGAGTTGGTGGGTATATATGCTTCCCAGCTTGCACGTCATCGTTGCATAGACCTTTTTGTTCACATGATGGAACTTAGGCTGCACAGCAGCGTGCATGTCAAATACAAGATATTCCTTTCTGCTATGGAATATTTACCCTTTTCTTCTGAGGATGATTCTAAGGGAAATTTTGAAGACATTATTGAGAGTGTTTTGATGAGATCTAGAGAGATCAAGGTTGGCAAATATGATAGCCTGTCAGATGTTGCTGAACAGCATAGACTTCAGAGTCTTCAAAAAGCTAAAGTCATCCAGTGGCTTTGCTTTACACCGCCATCAACAATTACTAATGTCAAAGATGTTAGTAAAAAACTTCTTCTCCGAGCATTGGTACATAGCAACATACTCTTCAGAGAGTTTGCCTTGATTTCTATGTGGAGAGTACCGGGGATGCCTATAGGTGCCCATACAGCACTTGGTTTTCTTGCTGAACCCCTGAAACAGCTTGCTGAAACTCTTGAGACCTCTGAGGATGATAATATATTTGAGGATTTAAGGGAGTTCCAAGACTGGCGTGAGTATTACTCCTGTGATGGAACCTACCGCAAGTGGCTCAAAGTTGAATTAGAGAATGCAGAAGTTCCTGTCTCTGAACTTTCACTAGAGGAAAAAGAAAGGGCTGTTTCAGCCGCCAAGGAAACACTGGATGCATCTCTTTCGCTGCTAGAAAGAAAAGAAACACCATGGTTGGCATCTATTGATCAGACATATGAATCAGCTGAACCTGTTTTCCTTGAACTTCATGCAACCGCAATGCTCTGCCTACCATCTGGAGAGTGTATGTGTCCAGATGCTACTGTATGCACTACACTGACGAGTGCCCTCTACTCTTCCGCTGGTGATGAGGTTGTCTTAAATCGACAACTAACGGTGAATGTGTCTATATCTTCAAGGGACAATTATTGCATTGATGTTGTTCTTCGTTGCTTAGCAGTAGCTGGTGATGGAATTGGACCACATGATTTCAATGATGGGGGTATTCTTGGCACCATTATGGCTGCTGGTTTTAAAGGCGAGCTTCCTCGGTTTCAAGCTGGAATTACAATGGAAATATCCCGATTGGATGCTTGGTATTCTGACAAAAGTGGTACCTTGGAGTGCCCGGCTACATACATTGTTAAAGGACTTTGTCGGAGGTGCTGTCTCCCTGAAGTCATTCTTCGTAGCATGCAGGTTTCTGTTTCTCTCATGGGATCTGGAGTTCTACCTGATTGCCATGACACTTTGGTTGAACTGGTTGGCAGTCCTGAAACTCAGTTTGTTCACCTGTTTAGTCAACAGCAGTTACAGGAATTTTTATTGTTTGAGAGGGAATACTCAATCTGCAAAATGGAGCTTTTGGAGGAATGA 3402 0.4362 MEDYEMAMDSSPSPSYFDPQDLTTRQQFRRYGKRHSTSGASIQQDNSASKLSQTGLFYDGQSIHSPTNAALVLENIKQEVESLDADYLEERAQHSSRRRLSADAHGVPGMDAGFYSERHSLKACKQEDESVGDGAETVFTLYASLLDSALQGFMPIPDLILRFENACRDVSESIRYGLNVRHRVVEDKLMRQKAQLLLDEAATWSLLWFLYGKGNISLTLDVQYFKNLLCLCPQLCYDIWFFKCISFFILILTLLIDELYTRDVTEELSKEKILVSDTSHVVACEFVAEDHAAQLFLRIVQWLEGLASKALDLEVKVRGSHVGSYLPNSGVWHHTQRYLKKGTSDMNIVHHLDFDAPTRENANLLPDDKKQDESLLEDVWTLLRAGRLEEACGLCRSAGQPWRAASLCPFGGLSQFPSVEALVKNGKNRTLQAVEFESGIGHQWHLWKWASYCASEKIAEQGGKYEAAVYGAQCSNLKRMLPLCTDWESACWAMAKSWLDVQVDMEVTRSLPGGVDQLRAFGDVIDGSHGHVDGSLEPSNGPENWPIQVLNQQPRQLSSLLQKLHSGEMIYETVTRQCKEQQRQIQMTLMLGDIPRVLDLIWSWIAPSDDDQNVFRPHGDPQMIRFGAHLVLVLRYLIADEIKGAFMDKIMSVGDHILHMYAMFLFSKEHEELVGIYASQLARHRCIDLFVHMMELRLHSSVHVKYKIFLSAMEYLPFSSEDDSKGNFEDIIESVLMRSREIKVGKYDSLSDVAEQHRLQSLQKAKVIQWLCFTPPSTITNVKDVSKKLLLRALVHSNILFREFALISMWRVPGMPIGAHTALGFLAEPLKQLAETLETSEDDNIFEDLREFQDWREYYSCDGTYRKWLKVELENAEVPVSELSLEEKERAVSAAKETLDASLSLLERKETPWLASIDQTYESAEPVFLELHATAMLCLPSGECMCPDATVCTTLTSALYSSAGDEVVLNRQLTVNVSISSRDNYCIDVVLRCLAVAGDGIGPHDFNDGGILGTIMAAGFKGELPRFQAGITMEISRLDAWYSDKSGTLECPATYIVKGLCRRCCLPEVILRSMQVSVSLMGSGVLPDCHDTLVELVGSPETQFVHLFSQQQLQEFLLFEREYSICKMELLEE* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1617 1133 Coils Coil 73 93 - -
Lja3g1617 1133 Gene3D - 753 947 - -
Lja3g1617 1133 PANTHER NUP107-RELATED 6 214 IPR007252 GO:0005643|GO:0017056
Lja3g1617 1133 MobiDBLite consensus disorder prediction 33 47 - -
Lja3g1617 1133 MobiDBLite consensus disorder prediction 1 47 - -
Lja3g1617 1133 PANTHER NUP107-RELATED 257 1132 IPR007252 GO:0005643|GO:0017056
Lja3g1617 1133 Pfam Nuclear pore protein 84 / 107 255 922 IPR007252 GO:0005643|GO:0017056
Lja3g1617 1133 PANTHER NUCLEAR PORE COMPLEX PROTEIN 6 214 - -
Lja3g1617 1133 Gene3D - 331 481 - -
Lja3g1617 1133 PANTHER NUCLEAR PORE COMPLEX PROTEIN 257 1132 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1617 K14301 - gmx:100786552 1928.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1617 3 17868444 17886731 Lja3g1617 3 17868444 17886731 ECH