Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1608 ATGTCTTGGGCAGGCCCTGAGGATATCTACCTTTCTACTTCACTTGCTAGTTATCTTGATAAGAAACTTCTTGTATTGCTGAGAGATGGGAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCCGTTCTCGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGACCTGTATTGTGACATCCCATTGGGCCTTTATGTAATTCGTGGGGAGAATGTTGTTCTCATTGGTGAACTGGACTTGGAGAGGGAGGAACTCCCCCCACATATGGTGCGTGTTTCCACAGCAGAAATTAAGAGGGCACAGAAAGCAGAAAGGGATGCTTCAGATCTGAAAGGGACTATGAGAAAAAGAATGGAATTCCTTGACTTGGACTAG 387 0.4548 MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPPHMVRVSTAEIKRAQKAERDASDLKGTMRKRMEFLDLD* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1608 128 CDD LSm1 12 82 IPR034104 GO:0000956
Lja3g1608 128 PANTHER LSM1 1 127 IPR044642 -
Lja3g1608 128 PANTHER U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1 1 127 - -
Lja3g1608 128 SMART Sm3 13 81 IPR001163 -
Lja3g1608 128 Gene3D - 12 125 - -
Lja3g1608 128 SUPERFAMILY Sm-like ribonucleoproteins 13 83 IPR010920 -
Lja3g1608 128 Pfam LSM domain 14 80 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1608 Lja-Chr3 17764677 17768822 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1608 K12620 - gmx:100306352 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1608 3 17764677 17768822 Lja3g1608 3 17764677 17768822 ECH