Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1606 ATGAGACCCCTTTTGGTTGGATTCTTCAGAGTACTTGCCCTTTTTGTTTTCTGCTCAGTTTGCTGTTCTTCCACAGAAGAAAGTACAAAATTGGAGAAAACTTTAGCTATTATTAAACCAGATGGATTGTTTGGTAACTACACAGATGATATCAAGGGAACAATTTTAGAACAGGGTTTCAGCATTGTTAAGGAAAAGAATGTTCAGCTTGATGAGGCAACTGTGAAAACATTTTATGCAGAGCACTCTTCAAAAGGCTTCTTTCCTAGCCTTATAAAATACATGACAAGTGGACCGGTATTACTTATGGTTTTGGAGAAGGATAATGCTATTGCTGATTGGCGTGCCTTAATGGGCCCTACTGATGCGAGCAAGGCCAAGATTACTCACCCTCACAGCATCAGAGCAAAATGTGGATTGGATACTGAAAAAAATTGTGTTCATGGTTCAGACTCTCCCAAATCTGCCCTGAGGGAGATAACATTTTTCTTCAGAGAGCTCTCTGCAGATGTAATTGCAGAACATGACGAGTTGTAG 537 0.4004 MRPLLVGFFRVLALFVFCSVCCSSTEESTKLEKTLAIIKPDGLFGNYTDDIKGTILEQGFSIVKEKNVQLDEATVKTFYAEHSSKGFFPSLIKYMTSGPVLLMVLEKDNAIADWRALMGPTDASKAKITHPHSIRAKCGLDTEKNCVHGSDSPKSALREITFFFRELSADVIAEHDEL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1606 178 ProSitePatterns Nucleoside diphosphate kinases active site. 145 153 IPR023005 -
Lja3g1606 178 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 14 177 - -
Lja3g1606 178 Gene3D - 30 175 IPR036850 -
Lja3g1606 178 Pfam Nucleoside diphosphate kinase 32 166 IPR034907 -
Lja3g1606 178 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 14 177 - -
Lja3g1606 178 PRINTS Nucleoside diphosphate kinase signature 34 56 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja3g1606 178 PRINTS Nucleoside diphosphate kinase signature 78 97 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja3g1606 178 PRINTS Nucleoside diphosphate kinase signature 98 115 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja3g1606 178 PRINTS Nucleoside diphosphate kinase signature 145 164 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Lja3g1606 178 SMART ndk_5 31 171 IPR034907 -
Lja3g1606 178 SUPERFAMILY Nucleoside diphosphate kinase, NDK 30 167 IPR036850 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1606 Lja-Chr3 17743645 17746493 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1606 K20790 - gmx:100500470 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1606 3 17743645 17746493 Lja3g1606 3 17743645 17746493 ECH