Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1595 ATGGCGGTTTCTACTATAGCTCTATACGCGAGTCCACCGAGCAGTGTGTGTTCACCACCGCATCCTTGCCCGCATGCTTCCTATGACTTTGAATTGGGAGCTAGATCTTCCTCGCCGGCATCGACAGCGACCGCGTCGACGTCGCAGAAGGCGGTAACGGGTGGGCTTTCGTGTTTGTTCTCATCTCCGGCGGCGGTGGTGAAGCACGCGCCGTTGTCGTCGAGCTTCTGCGGCACCGTAGATGAGGATGAATTGAAGGATCTGAGCAGCTCGTTCTCGTATTCGCCGAGTAAATTTGGTGGGTCTTCTTGGAAGAGGGATCAGAGCCCTGTGTCTGTTTTCCATGGTCCTGTTTCCTGTAGCAGCGGCGGCGGCGGCAGCACCGTTCGTTCGGTTGCTAAGGGATCAATCCCGGTGAGGATCGGGTGTGAAAGGGTTGGTGGGACGAGTGGCCTCTTTGATGGGTTTGTGAGGAATGCTTTGGGTTCTTGCTTGGATTATGATTCATCAAGTGTCAAATTTCGTGGTGGTGATATAGATGGAGGTGCCTCTTCTGCCCTGGTGGATGAGTTGACCTTCAATTTGGATGATACTTTTGTGGAGGGTGGCTTTGAGCCCTACGCTAAGAAGTTGCTGCTGGGGGCTCAGTTGAGGCACAAGATCTTTTGTGAAGAGTTCGTTATCAAGGCTTTTTGTGAAGCAGAGAAAGCTCACAGAGGACAGATGCGAGCTAGTGGAGATCCCTATTTGCAGCATTGTCTGGAAACTGCTGTGCTGCTGGCTATGATCGGTGCCAACTCCACAGTAGTTGCTGCTGGGCTTTTGCATGACACCCTTGATGACGCTTTTCTAACTTATGATTACATATTTGGGATGTTTGGCGCTGGAGTTGCTGATCTAGTGGAAGGGGTTTCTAAATTGAGTCACTTAAGCAAGCTGGCTCGTGAAAATAACACAGCTAGCAAGTCAGTTGAAGCAGATCGCCTGCATACAATGTTCCTTGCCATGGCAGATGCAAGAGCCGTCCTCATTAAATTGGCAGATCGACTACATAATATGATGACACTAGATGCGTTGCCGGTGGCCAAACAACAAAGGTTTGCAAAGGAGACTTTGGAGATTTTCGCACCTTTAGCCAACCGCTTAGGAATATCTAGTTGGAAGGAACAATTAGAAAATTTGTGTTTTAAGCATCTATATCCAATCCAATATGAGGAGCTTTCATCAAAGCTTGTTGATTCCTATGATGATGTAATGATTGCTTCTGCAATAGAGAGATTGGAGCAAGCTCTTAAAGATGAAGGCATTTCTTACCATGTCATTTCTGGGCGACACAAAAGCTTGTACAGCGTCTATTGCAAAATGCTAAAGAAGAAACTATCTATAGATGATATCCATGATATTTATGGGCTGCGCTTGATTGTTGACAAGGAAGAAGACTGTTATAAAGCCTTAACAGTTGTTCACAAGTTATGGTATGAGATACCTGGAAAGCTGAAAGATTACATATCTTGCCCCAAGTTCAATGGGTATCAATCTCTGCACACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTAGAGGTGCAAATTCGGACAAAAGACATGCATTTACAAGCAGAATTCGGGTTCGCTGCTCATTGGAGATACAAGGAAGATGACTGTCAACATTCTTCGTTCGTGCTCCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGCGAGGCAATGAGTAAAGATTGTTCGTCTGTGGGATATGCTGATTCAATCAAGTCACCATGCAAATTCCCTTCTCATGCCGCTGATTGCCCATATTCTTATAAGCCTGATAATGGTGAGGAGGGACCTGTTTTCATTATCATGATTGAGAATGACAAGATGTCGGTCCAAGAACTTCGTGCAAACTCGACAGTAATGGATTTGTTGGAGAGAGCGGGGCGGTCGAGCTCTCGGGTGATGACATACAGGTTCCCACTGAAGGAAGAATTGAGGCCAAGGCTGAACCACAAGCCTGTAAGTGATCCCTCTTGCAAGTTGAAGATGGGAGATGTGGTGGAGCTTACACCTGCCATACCTGACAAGTATCTCACAGAATATAGGGAAGAAATCCAACGCATGTATGATCGAGGCCTAACTGTATCAGGCACGGGCATGGTTGGTTCAAGAAGCTGA 2175 0.4722 MAVSTIALYASPPSSVCSPPHPCPHASYDFELGARSSSPASTATASTSQKAVTGGLSCLFSSPAAVVKHAPLSSSFCGTVDEDELKDLSSSFSYSPSKFGGSSWKRDQSPVSVFHGPVSCSSGGGGSTVRSVAKGSIPVRIGCERVGGTSGLFDGFVRNALGSCLDYDSSSVKFRGGDIDGGASSALVDELTFNLDDTFVEGGFEPYAKKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLAMIGANSTVVAAGLLHDTLDDAFLTYDYIFGMFGAGVADLVEGVSKLSHLSKLARENNTASKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLYPIQYEELSSKLVDSYDDVMIASAIERLEQALKDEGISYHVISGRHKSLYSVYCKMLKKKLSIDDIHDIYGLRLIVDKEEDCYKALTVVHKLWYEIPGKLKDYISCPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSKDCSSVGYADSIKSPCKFPSHAADCPYSYKPDNGEEGPVFIIMIENDKMSVQELRANSTVMDLLERAGRSSSRVMTYRFPLKEELRPRLNHKPVSDPSCKLKMGDVVELTPAIPDKYLTEYREEIQRMYDRGLTVSGTGMVGSRS* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1595 724 Gene3D Hypothetical protein af1432 216 400 - -
Lja3g1595 724 CDD NT_Rel-Spo_like 423 541 IPR007685 GO:0015969
Lja3g1595 724 ProSiteProfiles S4 RNA-binding domain profile. 667 704 - -
Lja3g1595 724 Pfam HD domain 234 384 - -
Lja3g1595 724 PANTHER - 1 715 - -
Lja3g1595 724 SMART hd_13 245 362 IPR003607 -
Lja3g1595 724 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 715 - -
Lja3g1595 724 Pfam Region found in RelA / SpoT proteins 443 552 IPR007685 GO:0015969
Lja3g1595 724 Gene3D Beta Polymerase, domain 2 402 533 IPR043519 -
Lja3g1595 724 ProSiteProfiles HD domain profile. 249 353 IPR006674 -
Lja3g1595 724 SUPERFAMILY HD-domain/PDEase-like 210 400 - -
Lja3g1595 724 SUPERFAMILY Nucleotidyltransferase 390 579 IPR043519 -
Lja3g1595 724 SMART RelA_SpoT_2 443 553 IPR007685 GO:0015969
Lja3g1595 724 CDD HDc 247 375 IPR003607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1595 Lja-Chr3 17475487 17480540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1595 244 550 EF-hand Containing Proteins AT3G17470 30.267 9.37e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1595 K00951 - gmx:100787301 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1595 3 17475487 17480540 Lja3g1595 3 17475487 17480540 ECH