Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1588 ATGAACACAATTTACATTCTTTTCCTCTTCACTTTTCTCTCAACAACCTCCTATGCTTCTGTCAATGATTTGTGTGTAGCAGACTTTAAAGGTCCAAGCACCCCTTCCGGCTACCACTGCATGCCCCTCGCTAACTTAACCTCAGACGACTTCGTCTTCCACGGCTTGGTTGCCGGAAACACCACAAACTCCTTCAACGCCGCCTTAACCTCCGCGTTTGTCACTGATTTCCCAGCCCTCAACGGCCTCGGCGTCTCCGCAGCAAGGTTGGACATAGCGAAAGGCGGTTCGATTCCGATGCACACGCACCCTGGTGCTACTGAGTTGCTGATGATGGTGAAAGGTAAGATCACTGCGGGGTTCATGACACCTACCGCGCTTTACTCCAAGACGGTGAAGCCGGGAGATATCATGGTTTTCCCGCAGGGGATGTTGCATTTTCAGGTGAATTCTGGTGTGGGGACAGCTAATGCTTTTCTTGCTTTCAGTAGTGAGAACCCTGGTGCCCAGCTACTTGATCTTCTTCTGTTTGCTAATGGATTGGATTCTGATATTGTGGCGAAAACTACGTTTCTTGATCTTGCTCAAGTGAAGAAGCTTAAAGCTCGTTTTAATGGGAAAAACTAG 627 0.4864 MNTIYILFLFTFLSTTSYASVNDLCVADFKGPSTPSGYHCMPLANLTSDDFVFHGLVAGNTTNSFNAALTSAFVTDFPALNGLGVSAARLDIAKGGSIPMHTHPGATELLMMVKGKITAGFMTPTALYSKTVKPGDIMVFPQGMLHFQVNSGVGTANAFLAFSSENPGAQLLDLLLFANGLDSDIVAKTTFLDLAQVKKLKARFNGKN* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1588 208 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Lja3g1588 208 Gene3D Jelly Rolls 18 208 IPR014710 -
Lja3g1588 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 6 204 - -
Lja3g1588 208 Pfam Cupin 58 197 IPR006045 -
Lja3g1588 208 SMART Cupin_1_3 54 198 IPR006045 -
Lja3g1588 208 CDD cupin_OxOx 19 204 - -
Lja3g1588 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 6 204 - -
Lja3g1588 208 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Lja3g1588 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Lja3g1588 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Lja3g1588 208 SUPERFAMILY RmlC-like cupins 47 205 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1588 Lja-Chr3 17432722 17433704 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1588 4 208 Miscellaneous Gene Families AT5G20630 55.072 6.79e-74 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1588 - - gmx:100783206 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1588 3 17432722 17433704 Lja3g1588 3 17432722 17433704 ECH