Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1586 ATGATTCGCATCAATATTCTTCTGCTCATCTTAGCAGCTTTCCTCTCATCATCCAATACCCACGCCTTGGTCTCAGACTTCTGTGTAGCAGATCTAAGCCGCTCAGTGAGCCCTGCAGGCTACGCCTGCAAGAAACCGCCACTAACCGTAAATGACTTCGTCTTCTCAAATTTCAAAGCTGGAAACACCTCCAACTTTCTCAACGCCGCACTAAACCCCGCCTTCGTCGACCAATTCCCAGGCATCAATGGGCTCGGACTCTCCGCAGCGCGGCTAGACTTAGACGCCGGCGGTGTGGTCCCCATTCACTCTCACCCAGGGGCCTCTGAGCTTGTCATAATTCTGCAAGGTCGCATCACTGTTGGGTTTATATCAACAGATAACACCGTTTATCAGAAGACGCTAATGAAGGGTGATATCATTGTTATCCCGCAAGGGTTGTTGCATTTTCAGCTGAATGCTGGTGGGAACAGAGCCTCTGCTGTTCTCACTTTCAGTAGCACGAATCCTGTAGCGCAGCTGGTTGATGTTGCTTTGTTTGGCAACAACTTGGATTCTGGTTTGGTGGCGAGGACTACCTTCCTTGATCTTGCTCAAGTGAAGAAGCTTAAGGCTGTTTTTGGAGGGCGTGGCTAG 636 0.5 MIRINILLLILAAFLSSSNTHALVSDFCVADLSRSVSPAGYACKKPPLTVNDFVFSNFKAGNTSNFLNAALNPAFVDQFPGINGLGLSAARLDLDAGGVVPIHSHPGASELVIILQGRITVGFISTDNTVYQKTLMKGDIIVIPQGLLHFQLNAGGNRASAVLTFSSTNPVAQLVDVALFGNNLDSGLVARTTFLDLAQVKKLKAVFGGRG* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1586 211 Pfam Cupin 58 200 IPR006045 -
Lja3g1586 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 12 207 - -
Lja3g1586 211 ProSitePatterns Germin family signature. 98 111 IPR019780 GO:0030145
Lja3g1586 211 PRINTS Germin signature 103 123 IPR001929 GO:0030145
Lja3g1586 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Lja3g1586 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Lja3g1586 211 SMART Cupin_1_3 56 201 IPR006045 -
Lja3g1586 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 207 - -
Lja3g1586 211 Gene3D Jelly Rolls 21 210 IPR014710 -
Lja3g1586 211 SUPERFAMILY RmlC-like cupins 24 204 IPR011051 -
Lja3g1586 211 CDD cupin_OxOx 21 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1586 Lja-Chr3 17407589 17408410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1586 21 211 Miscellaneous Gene Families AT1G72610 58.031 2.93e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1586 - - lja:Lj3g3v2590370.1 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1586 3 17407589 17408410 Lja3g1586 3 17407589 17408410 ECH