Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1585 ATGTGGATTGTAAAAGACCTAAAGGGAGCATTAAACCCTGCAGGCTATCCATGCAAGAAGCCGCCACTAACAGTGAACGACTTGGTGTTTTCTAACTTCAAAGCTGGAAACACCTCAAACATTCTCAAAGCTTCACCAACCCCGGCGTTTGTCGCGCAATTCCCAGCCGTGAACGGGCTGGGACTCTCTGCGGCGCGGGTAGATTTAGATGCCGGCGGTGTGGTCCCGATGCACTCTCACCCGGGCGCTACCGAGATGGTGATAATGGTGCGAGGCCGCATCACAACCGGGTTCATTGCTGCAGACAACTCTGTTTTTGTGAAGACGCTGAAGGAGGGTGATATCATGGTTATCCCACCAGGGTTGTTGCATTTTCAGGTGAATGCTGGTGGGAAGAAAGCCACTTGTTTTGTCACTTACAGTAGCCCAAATCCTGAGCCGCAGATCCTTTATAATGCGTTGTTTGGTAGCAGCTTAGATTCTGATTTGGTGGCAAGAACTACCTTCCTTGATCTTGCACAAGTTAAAAAGCTTAAGGTTAAATTTGGGGGAAGTGGCTAG 561 0.4938 MWIVKDLKGALNPAGYPCKKPPLTVNDLVFSNFKAGNTSNILKASPTPAFVAQFPAVNGLGLSAARVDLDAGGVVPMHSHPGATEMVIMVRGRITTGFIAADNSVFVKTLKEGDIMVIPPGLLHFQVNAGGKKATCFVTYSSPNPEPQILYNALFGSSLDSDLVARTTFLDLAQVKKLKVKFGGSG* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1585 186 ProSitePatterns Germin family signature. 73 86 IPR019780 GO:0030145
Lja3g1585 186 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 6 181 - -
Lja3g1585 186 SMART Cupin_1_3 39 176 IPR006045 -
Lja3g1585 186 Gene3D Jelly Rolls 2 186 IPR014710 -
Lja3g1585 186 CDD cupin_OxOx 3 182 - -
Lja3g1585 186 SUPERFAMILY RmlC-like cupins 8 181 IPR011051 -
Lja3g1585 186 PRINTS Germin signature 141 156 IPR001929 GO:0030145
Lja3g1585 186 PRINTS Germin signature 78 98 IPR001929 GO:0030145
Lja3g1585 186 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Lja3g1585 186 Pfam Cupin 34 175 IPR006045 -
Lja3g1585 186 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 6 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1585 Lja-Chr3 17401916 17403320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1585 2 186 Miscellaneous Gene Families AT1G72610 54.545 1.62e-65 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1585 - - lja:Lj3g3v2590370.1 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1585 3 17401916 17403320 Lja3g1585 3 17401916 17403320 ECH