Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1584 ATGCTTCCTCACATTGTTTTCCTCTTTTCCCTTCTCCTATCCACTTCCCATGCCGCTGTCCAAGACTTCTGTGTAGCAGACCTCAAGGGCTCAGATGGCCCTGCAGGCTACCCCTGCAAGACCCCTGCTACTGTAACCTCAGATGACTTTGTGTTTGCTGGCTTATCTGCACCAGGAAACATCACAAACATAATTGGTGCTGCTGTTACCCCTGCATTTGTTGGTCAATTCCCAGGTGTCAATGGGCTTGGACTTTCAGCAGCAAGGTTGGACATTGGCCCTGGTGGTGTTATCCCACTCCACACCCACCCTGGTGCCAATGAGCTTCTAATAGTGACCCAGGGTCACATCACTGCTGGATTCATTTCATCAGCTAGCACTGTTTACATCAAGACACTGAAAAAGGGGGAACTTATGGTTTTCCCACAAGGGTTGTTGCATTTTCAAGTAGCTGCTGGTAAGACAAAAGCTATTGGTTTTGCTATTTTCAGTAGCGCAAGCCCTGGCCTTCAAATCCTTGATTTTGCATTGTTTGCCAGCAACTTCTCTACTCCTTTGATCACAAAGACTACTTTCCTTGACCCTGCCCTGGTGAAGAAGCTTAAGGGTGTTCTTGGTGGCAGTGGCTAA 630 0.4794 MLPHIVFLFSLLLSTSHAAVQDFCVADLKGSDGPAGYPCKTPATVTSDDFVFAGLSAPGNITNIIGAAVTPAFVGQFPGVNGLGLSAARLDIGPGGVIPLHTHPGANELLIVTQGHITAGFISSASTVYIKTLKKGELMVFPQGLLHFQVAAGKTKAIGFAIFSSASPGLQILDFALFASNFSTPLITKTTFLDPALVKKLKGVLGGSG* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1584 209 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Lja3g1584 209 SMART Cupin_1_3 53 199 IPR006045 -
Lja3g1584 209 Gene3D Jelly Rolls 16 208 IPR014710 -
Lja3g1584 209 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Lja3g1584 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Lja3g1584 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Lja3g1584 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 4 205 - -
Lja3g1584 209 Pfam Cupin 54 195 IPR006045 -
Lja3g1584 209 SUPERFAMILY RmlC-like cupins 18 202 IPR011051 -
Lja3g1584 209 CDD cupin_OxOx 16 205 - -
Lja3g1584 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 4 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1584 Lja-Chr3 17398186 17399196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1584 17 209 Miscellaneous Gene Families AT1G72610 66.839 1.73e-91 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1584 - - gmx:100816355 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1584 3 17398186 17399196 Lja3g1584 3 17398186 17399196 ECH