Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1580 ATGTCGGTTGAATCGCCAAGCTCTGTTCGTAAAGTGGTTGTTCATCTGAGAGCTACCGGTGATGCTCCGATTCTCAAGCAATCCAAATTCAAGATAGCTGGAACTGATAAGTTTGCCAAAGTGATAGACTTTCTTCGCCGACAGCTCCATAGGGACACATTGTTTGTATACGTCAATAGTGCTTTTTCACCAAATCCTGATGAATTGATCATTGATTTGTATAATAATTTTGGTTTTGATGGCAAACTGATAGTCAACTACGCTTGTTCCATGGCATGGGGCTAA 285 0.4105 MSVESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSAFSPNPDELIIDLYNNFGFDGKLIVNYACSMAWG* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1580 94 PANTHER UBIQUITIN-LIKE PROTEIN ATG12B 1 94 - -
Lja3g1580 94 Gene3D - 5 94 - -
Lja3g1580 94 Pfam Ubiquitin-like autophagy protein Apg12 11 94 IPR007242 GO:0000045|GO:0005737
Lja3g1580 94 CDD Ubl_ATG12 11 93 - -
Lja3g1580 94 SUPERFAMILY Ubiquitin-like 10 93 IPR029071 -
Lja3g1580 94 PANTHER AUTOPHAGY PROTEIN 12 1 94 IPR007242 GO:0000045|GO:0005737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1580 K08336 - tcc:18596213 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1580 3 17335319 17338049 Lja3g1580 3 17335319 17338049 ECH