Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1577 ATGGCGGAACCCGCGTGTGGATCATCACCCTCCACCACCATGGACCCTCAAGCTCAAATTCCCAACGCAATTCCCTCATCTTCAAACCCTACAATCCAATCCCCTTCTCCAATCTCAAACTCCAACCTCGCCCAGCAACAACAACAACAATCCCCTTCACTCCCTCAAATCCCACAAGACCAGCTACAGCAGCCACAACAGCAACAACAGGCGCAGGGGCAAGCCATGAATATGAACCCTAATGTCTCCACCTTTCAACTCCACCAAACGCTTCAACGCTCGCCTTCCATGTCGCGCCTCAACCAAATTCAACCGCAGCAGCAGCAGCAGCAGTTCAGTGTCTCCAGGCAGCAGCCGGGACTCTATGGCGGACAGATGAACTTCGGTGGCTCTGCCTCCGCTCAGCAGCAGCAATTAGGCGGCGGCGCCAATCTGTCGCGGTCGTTGATGGGGCAGAGCAGCCACTTCCCCATGTTATCCGGTGCCGGAGCACAGTTTAGCCTATTGTCCTCGCCGAGGCAGAAAGGTGGGCTAGTCCAGTCCTCTCAATTCTCTTCGGCTAATTCTGCCGGACAACCACTGCAAAATATGCAAGCGATTGGGATGATGGGGTCGCCGAATCTCAGCTCCCAACTAAGAGCCGCTGGAGCCCTTGCTTATGCTCAGCAGCTCCGGATGACTCCGGGCCAAATAAGGCAGCAACTATCACAGCAGAGTTCGCTTAATGGGCAGCAGGTTCAAGGTTTACCAAGGTCGTCGTCCCTTGCTTTTGTGAATTCCCAGTTGTCTGGGTTGTCTCAAAACGGACAGCCTGCAATGGTTCATAATTCTTTAACACAACAACAGTGGATGAAGCAAATGCCACCAATGACTGGCCCTGCTTCACCATTACGTCTTCAACAACATCAGAGGCAGCAGCAGCTGGCTTCATCTACTCAACTTCCACAAAGCTCTATGACCCTGAGCCCACAGCAGTTGTCCCAGGTGATGCAGCAACAGAAATCAATGGCACAGCCTCAGCTGCATCAGCAGCAGCAGCAGCCGCCTCAGCAGCAGCAACAACTTATACAACAGCAGCCACAACAACAATCTCAACTACAAGCATCTGTTCATCAACAACAACAACAGCAATCCCCGAGGATACCAGGGCCCACAGGCCAAAAAACACTTAGTTTAACAGGATCGCAGCCAGATGCTACTGCATCTGGAACTACTACACCAGGGGGAAGTTCAAGCCAAGGAACTGAAACAACAAACCAAGTCCTCGGGAAAAGAAAGATACAGGATTTAGTTGCACAGGTGGATCCACAGGGTAAACTGGACCCTGAAGTTACAGATCTTCTTTTAGAGCTTGCTGATGACTTCATTGATTCTGCAACTACACATGGTTGCGTTTTGGCGAAACATAGAAAATCATCAACATTGGAGTCCAAGGATTTATTGCTACACTTAGAAAAGAATTGGGATCTCACAATTCCAGGATATTCAAGTGAAGAGAAGAAGTACCAGAGCAAACCTTTAAATGACCTCCACAAGAAGCGCCTAGAAATGATTTGCACATTGATGGAATCGTCACACTCCGAATCAAGCATTAACAGTTCTAAAGAGATGAGTAGGCAGGGCCTTCCTAACCCTGCGAGTGCCCACCACCTAGTAAGACCCTTGAGTTCGGAGCAGTTGGTTTCTCATTCAACTGGTTCTCAAATGCTTCAGCCGATGACAAGGTTTTAA 1731 0.4991 MAEPACGSSPSTTMDPQAQIPNAIPSSSNPTIQSPSPISNSNLAQQQQQQSPSLPQIPQDQLQQPQQQQQAQGQAMNMNPNVSTFQLHQTLQRSPSMSRLNQIQPQQQQQQFSVSRQQPGLYGGQMNFGGSASAQQQQLGGGANLSRSLMGQSSHFPMLSGAGAQFSLLSSPRQKGGLVQSSQFSSANSAGQPLQNMQAIGMMGSPNLSSQLRAAGALAYAQQLRMTPGQIRQQLSQQSSLNGQQVQGLPRSSSLAFVNSQLSGLSQNGQPAMVHNSLTQQQWMKQMPPMTGPASPLRLQQHQRQQQLASSTQLPQSSMTLSPQQLSQVMQQQKSMAQPQLHQQQQQPPQQQQQLIQQQPQQQSQLQASVHQQQQQQSPRIPGPTGQKTLSLTGSQPDATASGTTTPGGSSSQGTETTNQVLGKRKIQDLVAQVDPQGKLDPEVTDLLLELADDFIDSATTHGCVLAKHRKSSTLESKDLLLHLEKNWDLTIPGYSSEEKKYQSKPLNDLHKKRLEMICTLMESSHSESSINSSKEMSRQGLPNPASAHHLVRPLSSEQLVSHSTGSQMLQPMTRF* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1577 576 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 16 575 IPR037794 GO:0000124|GO:0005669|GO:0046695
Lja3g1577 576 MobiDBLite consensus disorder prediction 526 548 - -
Lja3g1577 576 Gene3D Histone, subunit A 417 492 IPR009072 GO:0046982
Lja3g1577 576 MobiDBLite consensus disorder prediction 91 146 - -
Lja3g1577 576 MobiDBLite consensus disorder prediction 286 421 - -
Lja3g1577 576 SUPERFAMILY Histone-fold 420 491 IPR009072 GO:0046982
Lja3g1577 576 MobiDBLite consensus disorder prediction 296 421 - -
Lja3g1577 576 MobiDBLite consensus disorder prediction 526 541 - -
Lja3g1577 576 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 16 575 - -
Lja3g1577 576 MobiDBLite consensus disorder prediction 1 75 - -
Lja3g1577 576 CDD TAF12 422 490 IPR003228 GO:0005669|GO:0006352
Lja3g1577 576 Pfam Transcription initiation factor TFIID subunit A 423 490 IPR003228 GO:0005669|GO:0006352
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1577 Lja-Chr3 17308047 17318032 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1577 K03126 - gmx:100783017 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1577 3 17308047 17318032 Lja3g1577 3 17308047 17318032 ECH