Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1572 ATGGAAACAGTGGTTGGAATTGAGGATAATGATTTTGGGAAGCTTGGAGACAGTGGGATTGATAGAAGCAGTTCTGCTTTGTCTTCACCGAAGCAGGTTGCTAACCCAATTGTATACAAGCTCGTACGGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGACGAAGTGAAGAAGGTGGAGGGTTTTCTTGAGTATGAAAACAGTGAAATGCGTGTTGTTGCAGATACTGGACAAAGTCTGGAGTGCATATCAATTGAGCGATCCTCTTCTGGGAAGCTTCGATTGGAGTGCCCTGAAGGCACCGCAGAAGCAGATTTGGGGAAGCTAAATGCGAGGTTTCAGTACATTGAACAGATTTTGCAAAAGGTCAAACATGAAGAGAAACTTCGCCTGTCATCTGGATCACCTGTTCATTCTCATGTAAATATAGAAAGCCAGTGTTCTGCTGATAAATTTCCTGTCATAGATGGGAAGGTTCAATCTGGAACTCTCAACCAGGAAATACCTTCTATAGCATCAAGTTTAAATTATAGTCATAGTAATCAATCTGGGAGTATAGATCAGTGTTCCAGACCTTCAGATGGAGTGATAGAAAGTGGATCATCTGCTTCTGCTGTATGTTCAGCTTTGGAGCCTGATTCTTCAATGGTAGATGAAGAAATATGCTTGGACAAGCTATCAATCAGAGAACTTCATGAACTGTTTAAGGTAACTTTTGGTCGGGAAACTACAGTGAAAGACAAACAGTGGCTGAAGAGGAGGATTTCCATGAGTTTAACTAACTCATGTGATGTCTCAGCGACAACTTTCATTGTTAAAGATAACAAAATGATTAGAAAATGTGAAGAAGACTGTTCTGGAAACGTGAATGCTGCAGATGTTATCTCTGTGGAAAATGTGGCAGGGGAAGAGGATAGCAAATTTAAGGATTCATCTGCAGTGGAGGATTGTGGGTTTGAGAATAACCCAAGTGTTACTGAATCAAGTCTGGAAAATCTTAATATGGAACATGAACTGAGTGGTGAGGATCACCTAAGAGAACAAAGAGCTGCGAAAAGAATGCGGAGGCCCACTAAGAGATATATCGAAGAGCTCTCTGAAAATGAATCTAGAGAGCATAACCCTAGGTTGCCAAGTTCTAACAAAAATATGGGATTTGGACATGTTTCTCCAACTTCATGCGCGAGGCCTGCTGGGAATGCTTTTCCAGAGGCAAGAACATTTATCACCAGATTAGACTCTCTTGGAGGTTCTGGCATTCAAATTCCTTGTGTTTCTCGGGTTCGAAGAAGTCGTCCAAGGAAAAATCTCACATCTCTTATGAAAACTCCAAGTCTGTTTCAGAAATTCCATCCAACTGGTGTGGGTGAGGCTGCAGAGTTGGGTTGTAAGGTACTCAGAGAGCATGGTTCTGATGGTGGTGAGAGTCAAGACTGTGGTGAGAGTCAGGACGGTGGTGAGAGTCAGGACCAGGTCTTGAAGCCAAGACCCTCGTGTGAAAAGGTTCATCAGCCATTTGCTTCAGAACCTGTTCAAGAGAAGCAGTGCTCAGCAATAGGCACAACTGAGCTACAGCAGGAATTGAGGCCTAAAAGGGAAGAGCCTAAAAGGGAAGAGCCTAAGAGGGAAGAGCCATCTAGCCATCCTTCAGAGGACAACATAGTTACTGTTCCCACTGCCAAAGGTGGAATGAGAAGGAAACATCATCGAGCATGGACTCTTGTTGAGGTAATGAAATTGGTTGAAGGCGTGTCACGGTGTGGTGCAGGGAAGTGGTCTGAGATCAAACGGCTCTCCTTTTCATCGGCTTCCTATCGTACCTCTGTTGATCTTAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTATGCGCAGACACCTGCAGATGTGGGGATGAAGAAGCATGGTACAGTTCCCATTCCAGAGCCAATTTTAGTTCGTGTGAGGGAGCTTGCAGAGAGGAATTCTCAGGTGCCTTCTAGCTATATCTCAAGCAAGTCAAAAGCTGGTGCAGGGGTTGTGTATGGAGATAGATCAGGGTACTTGTAG 2055 0.4414 METVVGIEDNDFGKLGDSGIDRSSSALSSPKQVANPIVYKLVRVEGDGRLVPATDDEVKKVEGFLEYENSEMRVVADTGQSLECISIERSSSGKLRLECPEGTAEADLGKLNARFQYIEQILQKVKHEEKLRLSSGSPVHSHVNIESQCSADKFPVIDGKVQSGTLNQEIPSIASSLNYSHSNQSGSIDQCSRPSDGVIESGSSASAVCSALEPDSSMVDEEICLDKLSIRELHELFKVTFGRETTVKDKQWLKRRISMSLTNSCDVSATTFIVKDNKMIRKCEEDCSGNVNAADVISVENVAGEEDSKFKDSSAVEDCGFENNPSVTESSLENLNMEHELSGEDHLREQRAAKRMRRPTKRYIEELSENESREHNPRLPSSNKNMGFGHVSPTSCARPAGNAFPEARTFITRLDSLGGSGIQIPCVSRVRRSRPRKNLTSLMKTPSLFQKFHPTGVGEAAELGCKVLREHGSDGGESQDCGESQDGGESQDQVLKPRPSCEKVHQPFASEPVQEKQCSAIGTTELQQELRPKREEPKREEPKREEPSSHPSEDNIVTVPTAKGGMRRKHHRAWTLVEVMKLVEGVSRCGAGKWSEIKRLSFSSASYRTSVDLKDKWRNLLKASYAQTPADVGMKKHGTVPIPEPILVRVRELAERNSQVPSSYISSKSKAGAGVVYGDRSGYL* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1572 684 PANTHER TRF-LIKE 3 1 684 - -
Lja3g1572 684 CDD SANT_TRF 572 622 - -
Lja3g1572 684 ProSiteProfiles Myb-like domain profile. 574 621 IPR001005 -
Lja3g1572 684 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 566 625 IPR017930 -
Lja3g1572 684 MobiDBLite consensus disorder prediction 366 385 - -
Lja3g1572 684 SMART sant 570 623 IPR001005 -
Lja3g1572 684 MobiDBLite consensus disorder prediction 470 558 - -
Lja3g1572 684 MobiDBLite consensus disorder prediction 528 551 - -
Lja3g1572 684 SUPERFAMILY Homeodomain-like 572 631 IPR009057 -
Lja3g1572 684 Gene3D - 561 667 - -
Lja3g1572 684 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 684 - -
Lja3g1572 684 Pfam Myb-like DNA-binding domain 573 621 IPR001005 -
Lja3g1572 684 MobiDBLite consensus disorder prediction 512 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1572 Lja-Chr3 17242916 17250542 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1572 - - gmx:100782501 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1572 3 17242916 17250542 Lja3g1572 3 17242916 17250542 ECH