Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1558 ATGAATTTGCAACAAGTTGGACAGCCTAAATCATCTAATGGATATGGTCGTCGGAAATCTGAAAAAGAAGGGGCAACTAAGTCTGATAATAAGATTCCCTCTGGTAAATCAAATACCAGCAGATTAGTGAGCACAGGCGCAATGACTGGCAATAAAAGTGGTAGTGATGAGAGTCCTTCACATGATCGACTAGTGTATTTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAGATACTGACAAAGATTTTGGAATCATTTTGAAAATGGCTCGCTTGACAAAGGATGGCTCTTCGCGAGGGCAGAGGTCTGGTGTAGAACTTCTCAACAAAGCTCCTTCCAAGACTTTTATCATACCTGGCAAAGAACTTGTACAAGTCATAGCGAAGGATATTGCTGTTTCTAGAGATGGCCAATCTAGTGAATCTCACTATGACATGCATCAGGAGATCATGGTTGATTCAGTCATATCTCAATCTCATCATGTTGAGATAGGGAGAGAATTGCAACGATGGGTACCTGATGAAGATGCTCCACAGTGCCCTGAACTGGAAAATATCTTTGATGACCCTTGGAATAGGGGATGGAATCAGTTTGAAACAAATGAAATGTTGTTTGGTGTAAAAAGCACATTCAATGAGGAAATCTATACAACAAAGCTTGAAAAAGGGCCTCGGACAAGAGAATTGGAAAGACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTAGCAGAGGAAAGGGGCCTTTACCATGATAACTTTGATATTGATGAAGAGACTCGGTTCTCCTCAGTGTATAGGGGTAAAGGTGTTGATGATAGTGGATGTGATGAAAATGAGGACAAGCTGTTGGATTCACTCAATACTGAAACTTTTGGTGATATGTCTGGTTCGGTTATTATGAGGCCAGGTGATATAAGTGGCGGAAAAGGCAATAATGGAGCTCAAACATGGTCAAATTTATCCTCTGTGGACCACTTACGCTCTGGTTCTTATGATCATGCTAAGCAGTTAGTATCTGATCTCCCTGCCCAAAGCTTATTGTTTTCGGATGGGGAAAGCAGGATTCATGATAATTCAGTTCGTGATCTACATGGAGCCAACAATAGTACCGCAGGGGAAAGTAAAATGCAAGCTGAGGATGTCCAGTTGTCGAAATCTGAGGATTTACAGTCATCACTCAACTTGAAGAAAGATGGCTCTGATAAAGGGGAGTTATCTCCTAATGCCACCTCCAGTGCCCCCTCTGCGCATACTTTACCAAAAACTGATGAGAAAACTGGGTCAATTGGGGAGTTGACTGGGGGTTCGGCCTCTGTCAAAGCTAATGGGGAAACGAAGTCTGTAAATTCACGTAGAAGACTGGGTAGTTCTATATCATCAGGTTCAGATTATGTGGCAGGTGTGACAACATCTTCCGCTCGTGGTCTATCTCCAAGTTCTTCAGTTGGTTCACTGTCTTCCGAGAAATCATCTCTGAATCCCTATGCCAAGGAATTCAAGCTCAACCCTAATGCCAAGAGTTTTATTCCAACTCAGACACCTGTTAGACCTCGCTCCCCAGCGTCTGATGGTTCCTTCTATTTCCCAGCTGGTGTATCTACTGTACCAAGTATGCCGGTCATGCCCATGGGTATTGGAGTTGGAACTACTTTTGCAGGGCAACAACCTATCATATATAATCCACAGGTAGCACAAATGCCATCCCAACCATATTTTCATCCGAATGGACAACAGTATGGACAGCTTGTTGGTCATCCTAGGCAAGTTTTCTACATGCCGAATTACCAACCTGAGACGCAATATAAGGGACGGAATTATTGA 1893 0.4263 MNLQQVGQPKSSNGYGRRKSEKEGATKSDNKIPSGKSNTSRLVSTGAMTGNKSGSDESPSHDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATDTDKDFGIILKMARLTKDGSSRGQRSGVELLNKAPSKTFIIPGKELVQVIAKDIAVSRDGQSSESHYDMHQEIMVDSVISQSHHVEIGRELQRWVPDEDAPQCPELENIFDDPWNRGWNQFETNEMLFGVKSTFNEEIYTTKLEKGPRTRELERQALRIAREIEGEETQDLHLAEERGLYHDNFDIDEETRFSSVYRGKGVDDSGCDENEDKLLDSLNTETFGDMSGSVIMRPGDISGGKGNNGAQTWSNLSSVDHLRSGSYDHAKQLVSDLPAQSLLFSDGESRIHDNSVRDLHGANNSTAGESKMQAEDVQLSKSEDLQSSLNLKKDGSDKGELSPNATSSAPSAHTLPKTDEKTGSIGELTGGSASVKANGETKSVNSRRRLGSSISSGSDYVAGVTTSSARGLSPSSSVGSLSSEKSSLNPYAKEFKLNPNAKSFIPTQTPVRPRSPASDGSFYFPAGVSTVPSMPVMPMGIGVGTTFAGQQPIIYNPQVAQMPSQPYFHPNGQQYGQLVGHPRQVFYMPNYQPETQYKGRNY* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1558 630 Coils Coil 242 262 - -
Lja3g1558 630 MobiDBLite consensus disorder prediction 386 414 - -
Lja3g1558 630 Gene3D - 68 143 - -
Lja3g1558 630 PANTHER ATAXIN-2 HOMOLOG 4 623 - -
Lja3g1558 630 MobiDBLite consensus disorder prediction 428 446 - -
Lja3g1558 630 PANTHER ATAXIN 2-RELATED 4 623 IPR045117 GO:0003723
Lja3g1558 630 MobiDBLite consensus disorder prediction 453 513 - -
Lja3g1558 630 MobiDBLite consensus disorder prediction 1 60 - -
Lja3g1558 630 MobiDBLite consensus disorder prediction 30 55 - -
Lja3g1558 630 MobiDBLite consensus disorder prediction 15 29 - -
Lja3g1558 630 SMART LsmAD_2 221 291 IPR009604 -
Lja3g1558 630 Pfam LsmAD domain 221 290 IPR009604 -
Lja3g1558 630 Pfam Ataxin 2 SM domain 61 145 IPR025852 -
Lja3g1558 630 MobiDBLite consensus disorder prediction 382 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1558 Lja-Chr3 17092743 17104442 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1558 - - lja:Lj3g3v2655630.1 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1558 3 17092743 17104442 Lja3g1558 3 17092743 17104442 ECH