Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1552 ATGGAGGGAAGGTCGCTACCAACAAGAGCAGAGTCTCAGAATGGAGCATATCAAAGAACAGAATCAAGGTACCAAAACTTTAAGGGGAATTGGATGGAAGAGATGCGAGGTTCCCTTATGGTGGTAGCCACAGTTATTGCAACCTTAACCTTCCAAATTGCTATAAACCCACCAGGAGGTGTTTGGCAAACAGACACAAATAGCCAGCAAGGTTGTGCTCCTGATAAAATATGCAAAGCTGGAACTTCAGTGTTAGCCTTTGGTGATAGTGACCAAAAGTTGAAATATGAGATTTTTATTCTGTTATGTACCATATCTTTCTCAGCATCTCAGACCATAATCCTGTTAATGATTAGTGGATTTCCCCTCCGTAACAGGGTAGTTATGTGGGTGCTTATATTAATCATGTGCACCTCAGTGTTTTGCACTGCAGGGGCCTATTTGATAGCTATTTGGATGGTGCTGAACCCTGCTAGCAGAACAGTTGTTCGGATCACACGGTATTATATACTGTTTTGGGTGGGATTAATTGTTTTGTTGTGTCTGGTTCTCTTCTGCCGCTTTGTGTTTTGGTTACTCAAGCAGTTCTTCCGCTTCTTATGTTGCTGCTGGTGA 615 0.4244 MEGRSLPTRAESQNGAYQRTESRYQNFKGNWMEEMRGSLMVVATVIATLTFQIAINPPGGVWQTDTNSQQGCAPDKICKAGTSVLAFGDSDQKLKYEIFILLCTISFSASQTIILLMISGFPLRNRVVMWVLILIMCTSVFCTAGAYLIAIWMVLNPASRTVVRITRYYILFWVGLIVLLCLVLFCRFVFWLLKQFFRFLCCCW* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1552 204 PANTHER CASKIN 31 161 - -
Lja3g1552 204 Pfam Domain of unknown function 30 154 IPR026961 -
Lja3g1552 204 PANTHER - 31 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1552 Lja-Chr3 17051965 17052579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1552 23 190 Miscellaneous Gene Families AT5G50140 25.287 1.32e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1552 - - vun:114165883 234.958