Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1543 ATGTTTGGTATCTTTGACAAAAGCCAAAAGATCAAGGGCACTGTGGTGTTGATGCCCAAGAAGTTCCTGGACTTCAACGACATAATATCCGCTACTAAAGGTGGGGTTCTTGGCCTTGCCGGTGATCTCTTGGAATTTGCTGGCGACGTTGCCGGCCAAGCAGTAGATACTGCCACTGCCATCTTCAGCCGTAGCGTTGCCATACAATTGATCAGTGCTACCAAGACTGATGCAAATGGAAATGGGAAACTTGGAGAGAGAACCTATATTGAGAAACATCTACCAACATTCCCAACCTTGGGAGCGAGGCAAGAGGCATTCCGCGTTTACTTTGACTACGATGCTAATTTCGGAATCCCAGGAGCATTTTACATTAAAAACTATACACAAGATGAGTTCTTCTTTGTGAGTCTCACCCTTGAAGACATTCCTAATCATGGAACAATTCACTTTGACTGCAACTCATGGGTTTACAATGCCAAATTGTACAAAAGAGATCGCATTTTCTTCACCAATGATGCATATCTTCCTGGGCAAACACCAGCAGCACTGGTCAAATACAGAAAAGAAGAATTAGAGAATTTAAGAGGAGATGGCACAGGAAAGCGCCAAGAACATGAAAGAATCTATGATTATGATGTCTATAACGATTTGGGAAATCCAGACGGTGGCGCCAAATTGGCTCGCCCAACCCTTGGTGGCTCCGCCACCTATCCCTACCCTCGCCGGGTCAGAACCGGTAGAAAATCAGCCAAGAAAGATCTTACTAGTGAATCAGCAGGCGAGATTTACGTTCCAAGAGATGAGAATTTCGGTCACTTGAAATCATCAGATTTCTTTACCTATGGAATCAAATCTCTATCTCAGGACGTGTTGCCTCTGTTTGAATCTGCCATTTTCGATTTGAACTTCACGCCAAATGAGTTTGATAGCTTCGATGAAGTGCGAGCACTTTACGATGGTGGAATTCAGCTGCCTACAAGCATTATCAGCAAAATTAGCCCTTTACCAGTTCTTAAGGAAATTTTTCGCACTGATGGTGAAAATGTTCTCCAATTTCCCAAACCTCATGTAGTTAGAGTTAGCAAGTCTGCATGGATGACTGATGATGAGTTTGCAAGAGAGATGATTGCGGGTGTAAACCCTAATGTGATTAGTTTGCTCCAAGAGTTCCCACCAAAAAGTAAGCTAGATGTCAAAGTCTATGGTGATCAAAATAGCACCATAACAACAAAAAACTTGGAGGATAATCTAGGTGGGCTCACAGTTAATGAGGCACTTAGTGGCAAGAGATTATTCGTATTGGATTACCATGATGCTTTCATGCCTTATTTGGAGAAGATAAACAAATTTGCAAAGGCTTATGCCACCAGGACAATTCTGTTCTTGAAAGACGACGGGGCTTTAAAGCCACTTGCTATTGAATTGAGTTTGCCGCATCCAAATGGAGTTGAGTATGGTGCCGTGAGCAAAGTCATCTTACCTGCCAATGAAGGTGCTGAAGGAACAATTTGGCTATTGGCCAAGGCTCACGTAATTGTGAATGACTCAGGCTATCATCAACTCATAAGCCACTGGTTAAATACTCATGCATCGATGGAGCCATTCGTCATTGCAACAAACAGACATCTCAGTGTGCTTCACCCTATTTTTAAACTCTTACATCCTCACTATCGTGACACAATAAATATCAATGGACTTGCTCGTCAAGCATTAATTAACGCAGATGGCATTATAGAGCAATCATTTTTGCCTGGACAGTATTCTATGGAGATTTCTTCTGTAGTTTACAGGGATTGGGTTTTCCCTGACCAGGCATTACCAGCTGATCTAATTAAGAGAGGAATGGCAGTTGAGGATCCCTCTGCCCCCCATGGTCTTCGTCTTGCAGTAGAGGACTACCCTTATGCTGTCGATGGACTTGAGATATGGGATGCTATTAAGAAGTGGGTTCAAGAATATGTGTCCTTATATTACCCAACAGATGATGCAGTCCAGAAAGACACTGAACTGCAATCTTGGTGGAAGGAAGTTGTACAAAGGGGTCATGCTGACTTGAAAGACAAGCCATGGTGGCCTAAGATGCAAACTCTTGCAGAGTTGATTCAATCTTGCTCTACTATCATATGGACTGCTTCAGCACTTCATGCAGCTGTTAATTTTGGACAGTATCCTTATGGAGGCTATATCCTGAACCGTCCAACCCTCAGCAGAAGATTGATCCCAGAAAAAGGAACTCCAGAATATGATGAGATGGTTAAAAATCCTCAAAAGGCTTACCTCAGAACCATCACACCAAAGTACCAGGCTCTTGTTGACCTTTCTGTGATAGAGATATTGTCTAGGCATGCTTCTGATGAGATCTACCTTGGGGAGAGGGAGAATCCAAATTGGACATCTGATTCAAAGGCACTACAAGCCTTCAAAAAGTTTGGAACCAAGCTGCAAGAAATTGAAGCGAAAATCACAGAAAGGAACAAAGATTCAAGTTTGAAAAACCGAATTGGCCCAGTTGAACTGCCCTACACTTTGCTCGTTCCTTCTAGTGAGGCAGGGTTAACTTTCAGAGGAATTCCAAACAGTATCTCTATTTAA 2595 0.4274 MFGIFDKSQKIKGTVVLMPKKFLDFNDIISATKGGVLGLAGDLLEFAGDVAGQAVDTATAIFSRSVAIQLISATKTDANGNGKLGERTYIEKHLPTFPTLGARQEAFRVYFDYDANFGIPGAFYIKNYTQDEFFFVSLTLEDIPNHGTIHFDCNSWVYNAKLYKRDRIFFTNDAYLPGQTPAALVKYRKEELENLRGDGTGKRQEHERIYDYDVYNDLGNPDGGAKLARPTLGGSATYPYPRRVRTGRKSAKKDLTSESAGEIYVPRDENFGHLKSSDFFTYGIKSLSQDVLPLFESAIFDLNFTPNEFDSFDEVRALYDGGIQLPTSIISKISPLPVLKEIFRTDGENVLQFPKPHVVRVSKSAWMTDDEFAREMIAGVNPNVISLLQEFPPKSKLDVKVYGDQNSTITTKNLEDNLGGLTVNEALSGKRLFVLDYHDAFMPYLEKINKFAKAYATRTILFLKDDGALKPLAIELSLPHPNGVEYGAVSKVILPANEGAEGTIWLLAKAHVIVNDSGYHQLISHWLNTHASMEPFVIATNRHLSVLHPIFKLLHPHYRDTININGLARQALINADGIIEQSFLPGQYSMEISSVVYRDWVFPDQALPADLIKRGMAVEDPSAPHGLRLAVEDYPYAVDGLEIWDAIKKWVQEYVSLYYPTDDAVQKDTELQSWWKEVVQRGHADLKDKPWWPKMQTLAELIQSCSTIIWTASALHAAVNFGQYPYGGYILNRPTLSRRLIPEKGTPEYDEMVKNPQKAYLRTITPKYQALVDLSVIEILSRHASDEIYLGERENPNWTSDSKALQAFKKFGTKLQEIEAKITERNKDSSLKNRIGPVELPYTLLVPSSEAGLTFRGIPNSISI* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1543 864 Pfam PLAT/LH2 domain 76 170 IPR001024 GO:0005515
Lja3g1543 864 PANTHER LIPOXYGENASE 1 864 IPR000907 GO:0016702|GO:0046872
Lja3g1543 864 PRINTS Lipoxygenase signature 520 537 IPR013819 GO:0016702|GO:0046872
Lja3g1543 864 PRINTS Lipoxygenase signature 540 560 IPR013819 GO:0016702|GO:0046872
Lja3g1543 864 PRINTS Lipoxygenase signature 502 519 IPR013819 GO:0016702|GO:0046872
Lja3g1543 864 ProSiteProfiles PLAT domain profile. 46 171 IPR001024 GO:0005515
Lja3g1543 864 Gene3D - 364 497 - -
Lja3g1543 864 PRINTS Plant lipoxygenase signature 455 479 IPR001246 GO:0016491
Lja3g1543 864 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Lja3g1543 864 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Lja3g1543 864 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Lja3g1543 864 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Lja3g1543 864 PRINTS Plant lipoxygenase signature 777 791 IPR001246 GO:0016491
Lja3g1543 864 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Lja3g1543 864 PRINTS Plant lipoxygenase signature 390 409 IPR001246 GO:0016491
Lja3g1543 864 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Lja3g1543 864 SMART LH2_4 9 172 IPR001024 GO:0005515
Lja3g1543 864 Gene3D - 275 363 IPR027433 -
Lja3g1543 864 Gene3D - 176 274 - -
Lja3g1543 864 SUPERFAMILY Lipoxigenase 176 864 IPR036226 -
Lja3g1543 864 ProSitePatterns Lipoxygenases iron-binding region signature 2. 547 557 IPR020834 GO:0016702|GO:0046872
Lja3g1543 864 ProSitePatterns Lipoxygenases iron-binding region signature 1. 520 534 IPR020833 GO:0016702|GO:0046872
Lja3g1543 864 CDD PLAT_LH2 10 172 IPR042057 -
Lja3g1543 864 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 1 864 - -
Lja3g1543 864 Gene3D - 498 863 - -
Lja3g1543 864 Gene3D PLAT/LH2 domain 1 175 - -
Lja3g1543 864 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 864 IPR013819 GO:0016702|GO:0046872
Lja3g1543 864 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 175 IPR036392 GO:0005515
Lja3g1543 864 Pfam Lipoxygenase 184 847 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1543 Lja-Chr3 16816803 16823355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1543 8 864 Acyl Lipid Metabolism Gene Families AT1G55020 57.454 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1543 K15718 - gmx:100815477 1368.99