Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1541 ATGCTTGCTGTAATGAAGAGCCGAAAGATCAAGGACAAGGGCCAAAACATCAGGGGCACTGTGGTGTTGATGCCCAAAAATGTGTTGGACTTCAACGCCATCGCGTCGGTCACTAATGGGGGTCTTCTGGGCATTGCGGGGAGATCCTTTAGCCTCGCCAATGACTTGGCCGGCCATGCATATGACAGTGCCACCGCCATCCTCAGCCGTGACATCGCCATACAGTTGATCAGTGCTACCAAGACTGATGCAAATGGAAATGGGAAACTTGGAAAGGAAACATATGTGCTGAAACGTCTTCCGACATTACCAACCTTGGGAGCAAAGCAGGAAGCATACAAGGTTAAATTTGACTATGATCCTGATTTTGGAATCCCAGGAGCATTTTACATCAGAAACAAAATGCAAGCTGAGTTCTTCCTTGTCAGTCTCACCCTCGAAGACATTCCCAATCAGGGAACAATTCGCTTTGATTGCAACTCCTGGGTTTACAACCATAAATTATACAAAAACAGGCATCGCATTTTCTTCACCAATCATACATATGTTGTTGGTCAAACACCAGTAGGACTTGTTAAGTACAGAGAAGAAGAGTTGGAGAATTTAAGAGGAGATGGAACAGGGGAACGCAAATTGCATGAAAGGGTCTATGATTATGATGTTTATAATGATTTGGGGAATCCAGATTCTAGTGCCGCTTTGGCTCGCCCAACAATTGGAGGCTCTACCACCCATCCTTACCCTCGCAGGGTCAGAACCGGTAGAAAACCATGCAAGAAAGATTCTGCCTGTGAGAAGCCTGCTGTGGACATATATGTCCCAAGAGATGAAAATTTTGGTCACTTGAAATCATCAGATTTCCTTACATATGGACTGAAATCTTTATCTCAGAACGTATTGCCATTGTTTAAATCTGCGATTTTTGATTTAAACTTCACGCCAAATGAATTTGATAGCTTCGAAGAAGTGCGTCGACTTTATGAAGGTGGAGTTAAGCTCCCTACAAATGTACTCAGCCAAATTAGCCCTTTACCGGTCCTTAAGGAAATCTTCCGCACAGATGGTGAAAATGTCCTCCAATTTCCGAAACCTCATGTAATCAGAGTTAGTAAGTCTGCATGGATGACTGATGTTGAATTTGGAAGAGAGATGATTGCTGGTGTAAATCCTGGTATAATTTGTTTGCTCCAAGAGTTCCCACCAAAAAGCAAGCTAGATGCTACGGTTTATGGTGATCAAAATAGTACATTAACAAAAGAACACTTGGAGATCAACCTGGGTGGACTCACAGTAGATGAGGCACTTGGTGCTAAGAGGTTATTCATACTAGATTACCATGATGCATTCATGCCATTTTTGGAGAAGATAAACAAAATTGCAAAGGCTTATGCAACAAGGACAATCCTATTTTTGAAAGATGATGGTGCTTTAACACCACTTGCCATCGAATTGAGTCTGCCACATCCAAACGGAGTTCAATATGGTGCTGAAAGCAAAGTCATCTTACCTGCCAACGAAGATGCTGAAGGAACAATTTGGCTACTGGCCAAGGCTCATGTTATTGTGAATGACTCGAGCTATCATCAAGTCATGAGCCATTGGTTAAATACTCATGCAGTGATGGAGCCATTCGTCATAGCAACAAACAGACATCTCAGTGTCCTTCACCCTATTAATAAACTCTTATATCCTCACTACCGTGACACAATAAATATCAATGGACTTGCTCGGCAAGCCTTAGTTAACGCAGATGGCATTATAGAAAAATCATTTTTGCCAGGACAATATTCTATGGAGATGTCATCTGCAGTTTACAAGGATTGGGTTTTCACTGACCAAGCTTTACCAGCTGATCTTATTAAGAGAGGAATGGCAATTGAGGATCCCTCTGCCCCCTATGGTCTTCGCCTTGTTGTAGAGGACTACCCTTTTGCTGTTGACGGACTTGAGATATGGGATGCTATTAAGACATGGGTTCTAGACTATGTGTCCTTATATTACTCGACAGATGATGAAATCCAGAAAGACACTGAACTACAAGATTGGTGGAAAGATGTTGTACAGAAGGGTCATGCTGACTTGAAAGACAAGGCATGGTGGCCTAAGATTCAAACTCTTGATGAGTTGGTTGAGTCGTGCTCTACTATCATATGGATTGCTTCAGCTCTTCATGCAGCTGTTAATTTTGGACAATATCCTTATGGAGGTTATATCCTGAACCGCCCAACACTGAGCAGGAGATTGATTCCGGAAAAAGGAACTCCAGAATATGATGAGATGGTGAAAAATCCTCAAAAGGCTTATTTAAGAACAATCACACCAAAGTTCCAGGCCCTTCGAGATCTTTCGGTGATAGAGATATTGTCTAGGCATGCTTCTGATGAGGTCTACCTTGGACAGAGGGACAATCCAAATTGGACATCTGATACAAGGGCATTACAAGCCTTCCAGAAGTTTGGAAGCAAGCTGCAAGAAATTGAAGGGAAAATCACAGAAAGGAACAAAGATTCAAGTTTGAAAAACCGAATTGGGCCAGTTGAACTGCCTTACACTTTGCTCCTTCCTTCTAGTGAGGAAGGATTAACTTTCAGAGGAATTCCAAACAGTATCTCTATTTAA 2619 0.4227 MLAVMKSRKIKDKGQNIRGTVVLMPKNVLDFNAIASVTNGGLLGIAGRSFSLANDLAGHAYDSATAILSRDIAIQLISATKTDANGNGKLGKETYVLKRLPTLPTLGAKQEAYKVKFDYDPDFGIPGAFYIRNKMQAEFFLVSLTLEDIPNQGTIRFDCNSWVYNHKLYKNRHRIFFTNHTYVVGQTPVGLVKYREEELENLRGDGTGERKLHERVYDYDVYNDLGNPDSSAALARPTIGGSTTHPYPRRVRTGRKPCKKDSACEKPAVDIYVPRDENFGHLKSSDFLTYGLKSLSQNVLPLFKSAIFDLNFTPNEFDSFEEVRRLYEGGVKLPTNVLSQISPLPVLKEIFRTDGENVLQFPKPHVIRVSKSAWMTDVEFGREMIAGVNPGIICLLQEFPPKSKLDATVYGDQNSTLTKEHLEINLGGLTVDEALGAKRLFILDYHDAFMPFLEKINKIAKAYATRTILFLKDDGALTPLAIELSLPHPNGVQYGAESKVILPANEDAEGTIWLLAKAHVIVNDSSYHQVMSHWLNTHAVMEPFVIATNRHLSVLHPINKLLYPHYRDTININGLARQALVNADGIIEKSFLPGQYSMEMSSAVYKDWVFTDQALPADLIKRGMAIEDPSAPYGLRLVVEDYPFAVDGLEIWDAIKTWVLDYVSLYYSTDDEIQKDTELQDWWKDVVQKGHADLKDKAWWPKIQTLDELVESCSTIIWIASALHAAVNFGQYPYGGYILNRPTLSRRLIPEKGTPEYDEMVKNPQKAYLRTITPKFQALRDLSVIEILSRHASDEVYLGQRDNPNWTSDTRALQAFQKFGSKLQEIEGKITERNKDSSLKNRIGPVELPYTLLLPSSEEGLTFRGIPNSISI* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1541 872 MobiDBLite consensus disorder prediction 233 259 - -
Lja3g1541 872 PRINTS Plant lipoxygenase signature 213 229 IPR001246 GO:0016491
Lja3g1541 872 PRINTS Plant lipoxygenase signature 314 335 IPR001246 GO:0016491
Lja3g1541 872 PRINTS Plant lipoxygenase signature 359 375 IPR001246 GO:0016491
Lja3g1541 872 PRINTS Plant lipoxygenase signature 785 799 IPR001246 GO:0016491
Lja3g1541 872 PRINTS Plant lipoxygenase signature 147 165 IPR001246 GO:0016491
Lja3g1541 872 PRINTS Plant lipoxygenase signature 246 265 IPR001246 GO:0016491
Lja3g1541 872 PRINTS Plant lipoxygenase signature 174 195 IPR001246 GO:0016491
Lja3g1541 872 PRINTS Plant lipoxygenase signature 398 417 IPR001246 GO:0016491
Lja3g1541 872 PRINTS Plant lipoxygenase signature 463 487 IPR001246 GO:0016491
Lja3g1541 872 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 15 182 IPR036392 GO:0005515
Lja3g1541 872 SUPERFAMILY Lipoxigenase 185 872 IPR036226 -
Lja3g1541 872 Gene3D - 183 282 - -
Lja3g1541 872 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 10 872 - -
Lja3g1541 872 Gene3D - 372 505 - -
Lja3g1541 872 ProSitePatterns Lipoxygenases iron-binding region signature 2. 555 565 IPR020834 GO:0016702|GO:0046872
Lja3g1541 872 Pfam Lipoxygenase 190 855 IPR013819 GO:0016702|GO:0046872
Lja3g1541 872 Gene3D PLAT/LH2 domain 8 182 - -
Lja3g1541 872 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 181 872 IPR013819 GO:0016702|GO:0046872
Lja3g1541 872 SMART LH2_4 15 179 IPR001024 GO:0005515
Lja3g1541 872 Gene3D - 507 871 - -
Lja3g1541 872 Gene3D - 283 371 IPR027433 -
Lja3g1541 872 PRINTS Lipoxygenase signature 510 527 IPR013819 GO:0016702|GO:0046872
Lja3g1541 872 PRINTS Lipoxygenase signature 528 545 IPR013819 GO:0016702|GO:0046872
Lja3g1541 872 PRINTS Lipoxygenase signature 548 568 IPR013819 GO:0016702|GO:0046872
Lja3g1541 872 ProSiteProfiles PLAT domain profile. 48 177 IPR001024 GO:0005515
Lja3g1541 872 PANTHER LIPOXYGENASE 10 872 IPR000907 GO:0016702|GO:0046872
Lja3g1541 872 ProSitePatterns Lipoxygenases iron-binding region signature 1. 528 542 IPR020833 GO:0016702|GO:0046872
Lja3g1541 872 Pfam PLAT/LH2 domain 82 177 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1541 Lja-Chr3 16746438 16752311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1541 15 872 Acyl Lipid Metabolism Gene Families AT1G55020 56.372 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1541 K15718 - gmx:100781402 1333.55