Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1538 ATGTTTTCCGGTGTGACAGGTCTGATCAACAGGGGCCAGAAGGTGAAGGGAACGGTGGTCGTGATTCACAAGAATTTGCTGGACATCAATGAACTCACCAAGGTTAAAACTGTTAGTGGTGCCATTACTGGCGCCTTCGGTGCCGTCGGTCAAGCCATTGGCACTGTTGTTGACGCCGCCACTTCCCTCGCCGGCCGCTCTGTGGCCCTGAAGCTCATCAGTGCGACTGTTGCTGATGCAAGTGGAAAAGGGAAAGTGGGGAAGCAAACCTGGGTGGAAGGTGTGATTACCAACTTGCCAAAATTGGGAGCAGGCCAGACTGCATATGACATTCATTTCGAATGGAACTTCGATGAGATGGGTATTCCCGGAGCCTTTTATATTGAGAATTTTCTCTCAGGTGGTGAGTTCTTGCTTATCAGCGTCACTCTTCACGACATTCCAAACAAAGGAAACATCGACTTCCTCTGCAACTCATGGGTTTACAATAACAAAAACTACAAAACTGAGCGCATTTTCTTTTCCAACCAGACATACCTTCCGGGTGAAACACCAGCTCCACTAGTGTACTACAGAGAACAAGAGCTGAAGACTGTAAGAGGAGATGGAACAGGAGAGCGCAAGGAATGGGACAGGGTCTATGACTACGATGTTTACAATGATTTGGGCGATCCCGACTCCAACATTCGTTTGAAACGTCCAGTTCTTGGAGGGAACAGCGATTTACCTTACCCTCGAAGGGGAAGAACCGGCAGAAAACCAGCTAAAAAAGATCCCCAAAGTGAGAGCCGCAGCAGCTTCTTTTACCTTCCAAGGGATGAGGCATTTGGTCACTTGAAGTCATCAGACTTTCTTACCTACATACTCAAATCTGCAACTCAAAATGTTATACCTGCGCTTCGATCTGCAGTTACATTACAATTCAACAACCCTGAGTTTAATACCTATGATGATGTGCTTTCACTCTATGAGGGTGGGATTAAGCTGCCAACTGATGTACTTAGCAAGCTTAGCCCTATTCCATTGTTCAAGGAATTCTTCAGGTCCGATGGTGAACAGGCCCTTAAGTTCCCACCACCTAAAGTGATTCAAGTGAATAAGTCTGCATGGATGACTGATGAAGAATTTGCTAGGGAGATGATTGCTGGAGTAAATCCTCACATCATTAGAAGACTTCAGGAGTTCCCACCTAAGAGCAAGCTAGATACCCAAGTCTATGGTGATCATACCAGTACAATAACCAAAGAACACTTAGAGCCAAACATGGGTGGGGTCACTGTTGAAGAGGCTCTTCAAAGCAACAAATTGTACATCCTAGACCACCATGACCCAATCATTCCATACTTGAGGCGAATTAACGCCACTGACACAAAGGCCTATGCTTCTAGAACCATTATTTTTGTTCAAAATGATGGAACTTTGAAGCCTTTGGCCATTGAGCTAAGTAAGTTGAGTGACAGTGGTAATGATAAGTCTGGTCCTGAAAGCACTGTTTACACACCGGCAGGCCAGGGTGCTGATGGTACTATTTGGCTACTTGCAAAGGCTTACGTTATCGTGAACGACTCTTGCTATCATCAACTTGTCAGCCATTGGTTAAACACTCATGCTGTTGTCGAGCCATTCATCATAGCAACAAACAGGCATCTTAGTGTGGTTCACCCTATCTACAAGCTTTTGTTTCCCCACTACCGTGACACAATGAACATTAATGCGCTTGCACGGAATGTCCTGGTTAATGCAGAGGGCATTATAGAATCAACATTCTTGTGGGGAAACTATGCTTTGGAAATGTCTGCTGTTGCTTACAAGGACTGGAATTTCACTGAGCAAGCACTACCTGCCGATCTACTCAAGAGGGGAGTGGCTGTTGAGGATCCTTCTGCCCCGCATGGCATTCGCCTGCTGATTGAAGATTATCCTTATGCTGCTGATGGACTAGAGATATGGGATGCTATCAAGTCATGGGTAGGAGAATATGTCAATTTGTACTACAAGTCAGATGCTGAAATTGTACAAGATGCTGAGCTCCAAGCATTTTGGACAGAACTAGTGCAGGTCGGTCATGGTGACTTGAAAAGTAAGCCATGGTGGCCTAAAATGCAGAATCGTGCAGAGTTGATTGAAGCCAGCTCCACCCTCATTTGGATTTCTTCAGCCCTTCACGCAGCTGTGAATTTTGGACAATATCCATATGGAGGCTATATCCTGAACCGGCCAACTCTTAGCAGGCGTTACATGCCTTCGAAAGATGCCGAGTTTGATGAGCTCTCTAAGAACCCTCAGAAGGCCTATTTGAGGACCATCACAGCAAAGAGTGAGACCCTGACTGACCTTACTATTATAGAGGTGTTGTCAAGGCATGCTTCTGATGAGTTGTACCTTGGGGAGAGAGACGGCGGTGATCTTTGGACTACTGATACACAGGCATTACAGGCCTTCAAGAAGTTTGGAACAAAGCTGGCTGAAATTGAGAAAAAGCTCATTCAGAGGAACAGTGATGAGAGCCTGAGGAACCGGTATGGGCCGGTGAAGATGCCCTACACTCTGCTCTATCCTTCTAGTGAGGAAGGATTGACTTTCAGAGGCATTCCTAACAGTATCTCCATCTGA 2613 0.4589 MFSGVTGLINRGQKVKGTVVVIHKNLLDINELTKVKTVSGAITGAFGAVGQAIGTVVDAATSLAGRSVALKLISATVADASGKGKVGKQTWVEGVITNLPKLGAGQTAYDIHFEWNFDEMGIPGAFYIENFLSGGEFLLISVTLHDIPNKGNIDFLCNSWVYNNKNYKTERIFFSNQTYLPGETPAPLVYYREQELKTVRGDGTGERKEWDRVYDYDVYNDLGDPDSNIRLKRPVLGGNSDLPYPRRGRTGRKPAKKDPQSESRSSFFYLPRDEAFGHLKSSDFLTYILKSATQNVIPALRSAVTLQFNNPEFNTYDDVLSLYEGGIKLPTDVLSKLSPIPLFKEFFRSDGEQALKFPPPKVIQVNKSAWMTDEEFAREMIAGVNPHIIRRLQEFPPKSKLDTQVYGDHTSTITKEHLEPNMGGVTVEEALQSNKLYILDHHDPIIPYLRRINATDTKAYASRTIIFVQNDGTLKPLAIELSKLSDSGNDKSGPESTVYTPAGQGADGTIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLFPHYRDTMNINALARNVLVNAEGIIESTFLWGNYALEMSAVAYKDWNFTEQALPADLLKRGVAVEDPSAPHGIRLLIEDYPYAADGLEIWDAIKSWVGEYVNLYYKSDAEIVQDAELQAFWTELVQVGHGDLKSKPWWPKMQNRAELIEASSTLIWISSALHAAVNFGQYPYGGYILNRPTLSRRYMPSKDAEFDELSKNPQKAYLRTITAKSETLTDLTIIEVLSRHASDELYLGERDGGDLWTTDTQALQAFKKFGTKLAEIEKKLIQRNSDESLRNRYGPVKMPYTLLYPSSEEGLTFRGIPNSISI* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1538 870 MobiDBLite consensus disorder prediction 230 264 - -
Lja3g1538 870 SMART LH2_4 13 176 IPR001024 GO:0005515
Lja3g1538 870 ProSitePatterns Lipoxygenases iron-binding region signature 1. 526 540 IPR020833 GO:0016702|GO:0046872
Lja3g1538 870 ProSitePatterns Lipoxygenases iron-binding region signature 2. 553 563 IPR020834 GO:0016702|GO:0046872
Lja3g1538 870 Gene3D - 280 368 IPR027433 -
Lja3g1538 870 Gene3D - 180 279 - -
Lja3g1538 870 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 178 870 IPR013819 GO:0016702|GO:0046872
Lja3g1538 870 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 7 870 - -
Lja3g1538 870 Pfam Lipoxygenase 188 853 IPR013819 GO:0016702|GO:0046872
Lja3g1538 870 ProSiteProfiles PLAT domain profile. 45 175 IPR001024 GO:0005515
Lja3g1538 870 Gene3D PLAT/LH2 domain 4 179 - -
Lja3g1538 870 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 179 IPR036392 GO:0005515
Lja3g1538 870 PRINTS Lipoxygenase signature 526 543 IPR013819 GO:0016702|GO:0046872
Lja3g1538 870 PRINTS Lipoxygenase signature 508 525 IPR013819 GO:0016702|GO:0046872
Lja3g1538 870 PRINTS Lipoxygenase signature 546 566 IPR013819 GO:0016702|GO:0046872
Lja3g1538 870 SUPERFAMILY Lipoxigenase 181 870 IPR036226 -
Lja3g1538 870 Gene3D - 369 503 - -
Lja3g1538 870 PRINTS Plant lipoxygenase signature 145 163 IPR001246 GO:0016491
Lja3g1538 870 PRINTS Plant lipoxygenase signature 355 371 IPR001246 GO:0016491
Lja3g1538 870 PRINTS Plant lipoxygenase signature 460 484 IPR001246 GO:0016491
Lja3g1538 870 PRINTS Plant lipoxygenase signature 171 192 IPR001246 GO:0016491
Lja3g1538 870 PRINTS Plant lipoxygenase signature 310 331 IPR001246 GO:0016491
Lja3g1538 870 PRINTS Plant lipoxygenase signature 210 226 IPR001246 GO:0016491
Lja3g1538 870 PRINTS Plant lipoxygenase signature 243 262 IPR001246 GO:0016491
Lja3g1538 870 PRINTS Plant lipoxygenase signature 394 413 IPR001246 GO:0016491
Lja3g1538 870 PRINTS Plant lipoxygenase signature 782 796 IPR001246 GO:0016491
Lja3g1538 870 PANTHER LIPOXYGENASE 7 870 IPR000907 GO:0016702|GO:0046872
Lja3g1538 870 Pfam PLAT/LH2 domain 80 174 IPR001024 GO:0005515
Lja3g1538 870 Gene3D - 504 869 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1538 Lja-Chr3 16666594 16672116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1538 1 870 Acyl Lipid Metabolism Gene Families AT1G55020 54.944 0.0 976
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1538 K15718 - gmx:100816880 1402.5