Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1518 ATGAAGGGAAGTAGAATCTTCTGTTTTCTGCTAACTCTGCACATAGTGAGTTGGGTTTCTGCAGCAAGAAGGCCATTTCTTCCTACTGATGGCATTTCACATCCAGCCCAAGAAGAGGCTCTAGAGTCTTCCAAGCCATATACTATAGAATCAAAGAAGGAAGCATATGATAGAGGAATGAGCAAAATAGGGTCAAGTCCACCAAGCTGTGAGCATAAGTGCTATGGCTGTGTTCCATGTGAAGCCATCCAAGTACCCAGCACCAGCAGCCATTTGGGCATCCAGTATGCAAATTATGAACTTGAGAGCTGGAAATGCAAGTGTGCTGAATGCTGTGTGCATTTAGCTTCGATTTTTATTTTATATTTACTGTTTTATTCTGAAGGGAAGCGTGTGGCGGTCAAGTATTACTCAGATGACTGGCCAACAAACAATTCAAAGTTAGCTTTCGAGAAGTTTGTATTCAGTAAGACTCTTAAGACAAATGCTCGGACAGAAGCTGAGGTAACACTACTTGAGAACAATATCATTATTTACAAATTTGTGCAAGACCTGCATTTCTTTGTCACTGGTGGTGATGATGAAAATGAACTCATTTTGGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGGAGCAATGTTGACAAAAGAGAGGCACTTGAGAATTTGGACCTCATTCTTTTATGTCTTGACGAGATTGTTGACGGAGGGATAATACTTGAAACAAATGGACCTCTTATTGCTGAAAAAGTGACCTCCCATAGCTTGGATGCTGATGCCCCCTTGTCAGAGCAGACTCTAACTCAAGCATGGGCTACAGCCAGAGAACATTTGACAAGAACCCTTTTAAAATGA 870 0.4149 MKGSRIFCFLLTLHIVSWVSAARRPFLPTDGISHPAQEEALESSKPYTIESKKEAYDRGMSKIGSSPPSCEHKCYGCVPCEAIQVPSTSSHLGIQYANYELESWKCKCAECCVHLASIFILYLLFYSEGKRVAVKYYSDDWPTNNSKLAFEKFVFSKTLKTNARTEAEVTLLENNIIIYKFVQDLHFFVTGGDDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCLDEIVDGGIILETNGPLIAEKVTSHSLDADAPLSEQTLTQAWATAREHLTRTLLK* 290
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1518 289 Gene3D - 115 259 - -
Lja3g1518 289 Pfam Clathrin adaptor complex small chain 123 258 IPR022775 -
Lja3g1518 289 Pfam Epidermal patterning factor proteins 62 110 - -
Lja3g1518 289 CDD Zeta-COP 123 255 - -
Lja3g1518 289 PANTHER CLATHRIN ADAPTOR COMPLEX SMALL CHAIN 113 289 - -
Lja3g1518 289 PANTHER ZETA-COAT PROTEIN 113 289 IPR039652 GO:0006890|GO:0030126
Lja3g1518 289 SUPERFAMILY SNARE-like 123 260 IPR011012 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja3g1518 Lja-Chr3 16397218 16416686 Dispersed/Wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1518 K20472 - gmx:547466 303.908