Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1501 ATGTATCGATTGGCAGCTAAACTAGCTTCTTCCACCTTAAAGAACAACAACCCCGTGTATAGGGGGGTGTTGTCAAGAAGAAATTATGTGGCCAAAGATATCAGCTTCGGGGTCGGGGCTCGTGCTGCTATATTGCAGGGTGTCTCTGAAGTTGCTGAGGCTGTCAAAGTTACCATGGGACCCAAGGGTCGCAATGTGATAATTGAGAAAAGCCACAGGAATCCAAGGGTCACGAAGGATGGCGTGACTGTAGCCAAAAGTATCAGCTTTGAAGATAAAGCTAAAAATATTGGTGCTGGTCTCGTCAAGCAGGTGGCGAAGGCTACCAACACTGCTGCTGGAGACGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGTTGCAAATCTGTTGCTGCTGGAGTAAATGTCATGGATTTGCGTAATGGAATAAATAAGGCAGTTGCTGCTGTAATTACTGATTTAAAAAGCAGAGCAGTAATGATAAGCACACCTGAAGAGATAACCCAGGTTGGAACCATATCTGCTAATGGGGAGCGTGAAATTGGAGAATTGATAGCAAGAGCAATGGAGAAAGTCGGGAAGGAAGGAATAATCACTGTTGCTGACGGAAATACGTTAGAGAACGAGTTGGAAGTGGTAGAAGGAATGAAGCTAGCTAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTGAATTGGAGAACCCCTTTATCCTCATCCATGACAAGAAAATTTCAGACATAAATTCACTGTTGAAAATATTGGAGCTGGCAGTCACGAAAAAAAGACCACTCCTAGTTGTTGCGGAAGATGTTGAAAGTGATGCATTGGCTATGCTCATACTCAACAAGCATCATGCTGGGCTTAAGGTTTGTGCCATAAAAGCTCCTGGCTTTGGGGATAGCAGAAAAGCAAATTTAGATGACCTTGCAATTCTTACTGGAGGAGAGGTCATCACGGAAGATCGCGGTTTTACTCTTGACAAAGTCCAACCAGAATTGCTTGGCACTGCAAAAAAGGTTACTGTCTCCATCGATGACACTATCATTCTACATGGTGGTGGGGATAAGAAGCTCATTGAAGAGAGATGCGAGGAGCTTAGGACAGCTATGGACAAGAGTTCTGCGACGTTTGATAAAGAAAAAGCACAAGAACGACTTTCAAAACTCTCTGGTGGTGTTGCTGTTTTCAAAGTTGGGGGGGCTAGTGAGTCAGAAGTCGGGGAAAGGAAAGATAGAGTGACAGATGCGTTAAATGCCACAAGAGCAGCGGTAGAGGAGGGTATTGTTCCAGGTGGTGGAGTCGCTCTCTTATATGCTACCAAAGTCTTGGAGAACCTTGAAACTAAAAACGAGGATGAGAAAAGAGGAGTACAGATTATTCAGAACGCACTTAAGGCTCCTACAGTCACAATAGCTGCAAATGCTGGTTTTGATGGTTCTTTGGTTCAAAACAAATTGTTGGAACAGGATGATCATAATTTGGGTTTTGATGCTGCTAAAGGAACCTATGTTGATATGGTGAAGGCTGGAATTATAGATCCTCTGAAAGTTGTTAGAACAGCTCTGGTAGATGCTGCCAGTGTGTCATTGCTACTTACGACCATGGAGGCAGCTGTGGTGGAGAACCCGAATAACAAAAATAAATCGCCAAGCCCGGTAGCGGATATGGATGATTTGGACTATTAA 1719 0.4375 MYRLAAKLASSTLKNNNPVYRGVLSRRNYVAKDISFGVGARAAILQGVSEVAEAVKVTMGPKGRNVIIEKSHRNPRVTKDGVTVAKSISFEDKAKNIGAGLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRNGINKAVAAVITDLKSRAVMISTPEEITQVGTISANGEREIGELIARAMEKVGKEGIITVADGNTLENELEVVEGMKLARGYISPYFITDQKTQKCELENPFILIHDKKISDINSLLKILELAVTKKRPLLVVAEDVESDALAMLILNKHHAGLKVCAIKAPGFGDSRKANLDDLAILTGGEVITEDRGFTLDKVQPELLGTAKKVTVSIDDTIILHGGGDKKLIEERCEELRTAMDKSSATFDKEKAQERLSKLSGGVAVFKVGGASESEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKVLENLETKNEDEKRGVQIIQNALKAPTVTIAANAGFDGSLVQNKLLEQDDHNLGFDAAKGTYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTMEAAVVENPNNKNKSPSPVADMDDLDY* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1501 572 ProSitePatterns Chaperonins cpn60 signature. 433 444 IPR018370 GO:0005524|GO:0006457
Lja3g1501 572 SUPERFAMILY GroEL-intermediate domain like 166 232 IPR027410 -
Lja3g1501 572 Pfam TCP-1/cpn60 chaperonin family 51 551 IPR002423 GO:0005524
Lja3g1501 572 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 24 565 - -
Lja3g1501 572 Gene3D - 34 551 IPR027413 -
Lja3g1501 572 Coils Coil 454 474 - -
Lja3g1501 572 MobiDBLite consensus disorder prediction 553 572 - -
Lja3g1501 572 Gene3D - 165 438 IPR027410 -
Lja3g1501 572 CDD GroEL 32 552 IPR001844 GO:0042026|GO:0140662
Lja3g1501 572 Gene3D GroEL 220 401 IPR027409 -
Lja3g1501 572 Hamap Chaperonin GroEL [groEL]. 30 570 IPR001844 GO:0042026|GO:0140662
Lja3g1501 572 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 24 565 - -
Lja3g1501 572 SUPERFAMILY GroEL equatorial domain-like 35 550 IPR027413 -
Lja3g1501 572 PRINTS 60kDa chaperonin signature 55 81 IPR001844 GO:0042026|GO:0140662
Lja3g1501 572 PRINTS 60kDa chaperonin signature 426 447 IPR001844 GO:0042026|GO:0140662
Lja3g1501 572 PRINTS 60kDa chaperonin signature 111 138 IPR001844 GO:0042026|GO:0140662
Lja3g1501 572 PRINTS 60kDa chaperonin signature 378 403 IPR001844 GO:0042026|GO:0140662
Lja3g1501 572 PRINTS 60kDa chaperonin signature 296 319 IPR001844 GO:0042026|GO:0140662
Lja3g1501 572 SUPERFAMILY GroEL apical domain-like 212 404 IPR027409 -
Lja3g1501 572 TIGRFAM GroEL: chaperonin GroL 31 555 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1501 Lja-Chr3 16078534 16086544 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1501 K04077 - gmx:100787285 954.51