Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1489 ATGGACTTGCCTGATGACTCGTTGTCTCTGGTAATTCAATTCTTGTCTTTTTTTCTCGATCTCCATTTTTGTTTCTCTAACAATGACTTTGAATCTGGTTTGACTCAGACATCGAGCTTAACTATCGGCGAGGCGCTCTGCGCGGTCTGCATACCGTTAATCGGAATCGTCGAAGCTTTGTTTTTCGGGTTAGCTGGTTGCTTCGATTTCCATCGTGGAACCAACAAGGTCAACAACAACAACAACAACAAAATCTCTTGTTCCTTCCACGATTTTCTTACCCTCGCCAAAAACTCTCCATTTACGGTTAATGAAATTGAGGCGTTGTATGAGTTGTTCAAGAAATTGAGTAGTTCAATCATTGATGATGGTCTCATTCATAAGGAAGAGCTCACACTGGCATTGTTGAAGACCTCAACTGGCAAGAATCTTTTCCTTGATAGGGTGTTTGATCTATTTGATGAGAAAAGAAATGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTCATACGCCTTTGGAGAAGAAAATTGATTTTGCTTTCAGATTGTATGACTTGAGACAAACCGGATACATTGAACGAGAAGAAGTTAGACAAATGGTGGTTGCCATTTTGTCAGAATGTGGCATGGATCTAGAAGATGAAGTCCTTGAAAGCATTATTGATAAGACATTTCAAGATGCTGACACCGATGGGGATGATAAGATATGTAAAGAAGAATGGAAGGAATTTGTCCTGCGGCATCCAACACTCTTGAAGCACCTGACTCTTCCTGATCTGAAGGACATCACCACAGTATTTACCAGTTTCATTTTCAACACTGAAGTTGATGATTCCCACTGGCAACTCAACAACAATCATAAACACTAA 888 0.4032 MDLPDDSLSLVIQFLSFFLDLHFCFSNNDFESGLTQTSSLTIGEALCAVCIPLIGIVEALFFGLAGCFDFHRGTNKVNNNNNNKISCSFHDFLTLAKNSPFTVNEIEALYELFKKLSSSIIDDGLIHKEELTLALLKTSTGKNLFLDRVFDLFDEKRNGVIEFEEFVHALSVFHPHTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSECGMDLEDEVLESIIDKTFQDADTDGDDKICKEEWKEFVLRHPTLLKHLTLPDLKDITTVFTSFIFNTEVDDSHWQLNNNHKH* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1489 295 PANTHER CALCINEURIN B 31 284 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lja3g1489 295 Pfam EF hand 146 166 IPR002048 GO:0005509
Lja3g1489 295 PRINTS Recoverin family signature 196 214 - -
Lja3g1489 295 PRINTS Recoverin family signature 149 170 - -
Lja3g1489 295 PRINTS Recoverin family signature 242 262 - -
Lja3g1489 295 CDD EFh 146 207 IPR002048 GO:0005509
Lja3g1489 295 ProSitePatterns EF-hand calcium-binding domain. 235 247 IPR018247 -
Lja3g1489 295 Gene3D - 91 285 - -
Lja3g1489 295 SMART efh_1 145 173 IPR002048 GO:0005509
Lja3g1489 295 SMART efh_1 182 210 IPR002048 GO:0005509
Lja3g1489 295 SMART efh_1 226 254 IPR002048 GO:0005509
Lja3g1489 295 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
Lja3g1489 295 Pfam EF-hand domain pair 181 250 IPR002048 GO:0005509
Lja3g1489 295 CDD EFh 182 251 IPR002048 GO:0005509
Lja3g1489 295 SUPERFAMILY EF-hand 95 276 IPR011992 -
Lja3g1489 295 ProSiteProfiles EF-hand calcium-binding domain profile. 222 257 IPR002048 GO:0005509
Lja3g1489 295 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 31 284 - -
Lja3g1489 295 ProSiteProfiles EF-hand calcium-binding domain profile. 178 213 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1489 Lja-Chr3 15946050 15949610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1489 66 285 EF-hand Containing Proteins AT5G55990 58.636 3.14e-86 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1489 K06268 - gmx:100801943 411.379