Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1486 ATGGATCAGCAGCCATTCGACCCGTATTTCCTGTACCAACAAGACGAGCGAAGCAACATCAACACACTCTTCGTCTCCGGTCTCCCAGACGACGTGAAAGCCCGTGAAATCCACAACCTCTTCCGCCGCCGCCCTGGCTTCGACTCTTGCCAGCTCAAGTACACCGGCCGCGCCAACCAGGTCGTTGCTTTCGCTACGTTTTTCAACCACCAATCAGCAATGGCAGCGTTGCACGCCCTAAATGGTGTGAAATTTGACCCTCAAACTGGATCTGTTTTACATATTGAACTTGCAAGGTCAAACTCCAGGAGGAAACGTAAGCCAGGTGGTGGAGCCTACGTGGTTATAGATAAAAGGTCAAAAGGGGAGACTAATGTTCAGGAATCATCGAGTGATGATGGTGAAAGTGACCCTGATGAACCATCGGAAAGTGGAGACAACCATGGTGATTTAGCAACCACGCAAAGTGGAGAGACTGCTGTTGGTTCTGACAGTGCTGTACCTCTGGGAAGTGAGCAACATGAAAAGGGTGGTGGTGATGGAGGGCCATGTTCTACTCTCTTTATTGCAAATCTGGGTCCTAACTGCACTGAGGATGAATTGAAGCAAGCTTTATCTGTATATACTGGATTCAACATGGTCAAAATGCGTTCTAGAGGAGGAATGCCTGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTACTAAGGTCTTGGAGGAGCTTCAGGGCAGCTCTTTGCCATCATCAGATCGGGGTGGCATGCACATAGAGTATGCAAGGTCTAAAATGAGGAAGCGTTAG 804 0.4838 MDQQPFDPYFLYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGETNVQESSSDDGESDPDEPSESGDNHGDLATTQSGETAVGSDSAVPLGSEQHEKGGGDGGPCSTLFIANLGPNCTEDELKQALSVYTGFNMVKMRSRGGMPVAFADFEEIDQATKVLEELQGSSLPSSDRGGMHIEYARSKMRKR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1486 267 MobiDBLite consensus disorder prediction 244 267 - -
Lja3g1486 267 Gene3D - 180 267 IPR012677 -
Lja3g1486 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Lja3g1486 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 249 IPR000504 GO:0003723
Lja3g1486 267 CDD RRM_scw1_like 183 261 - -
Lja3g1486 267 SUPERFAMILY RNA-binding domain, RBD 21 246 IPR035979 GO:0003676
Lja3g1486 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 262 IPR000504 GO:0003723
Lja3g1486 267 PANTHER RNA-BINDING PROTEIN-RELATED 12 256 - -
Lja3g1486 267 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 12 256 - -
Lja3g1486 267 SMART rrm1_1 186 258 IPR000504 GO:0003723
Lja3g1486 267 SMART rrm1_1 22 93 IPR000504 GO:0003723
Lja3g1486 267 CDD RRM_RBPMS_like 21 96 - -
Lja3g1486 267 Gene3D - 16 103 IPR012677 -
Lja3g1486 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Lja3g1486 267 MobiDBLite consensus disorder prediction 147 162 - -
Lja3g1486 267 MobiDBLite consensus disorder prediction 101 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1486 Lja-Chr3 15922775 15929529 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1486 - - cam:101503574 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1486 3 15922775 15929529 Lja3g1486 3 15922775 15929529 ECH