Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1464 ATGGCTTCCTTCAAATGCTTCCATTTTTTCATCATCACTTTGCAAGTTTTTGCTGCAATACCCATTTTCTCATTAGCAGATTCCTCCTTCACACAAAATCAGCTCTTCACAAAGTTCCTAGACACTGCCAAGAAACCTGAGCTTTTTGATTGGATGCTCACTATCAGAAGGAAGATACACCAGTTTCCTGAATTGGCCTATCAAGAATTTCAAACCAGTGAAGTCATAAGAGCAGAATTGGATAAGTTGGGGATCCCCTATAAACACCCTGTTGCAGAAACTGGTGTTATTGGCTTCATAGGGTCTGGAAAGTCACCTTTTGTTGCCTTAAGAGCTGATATAGATGCTCTTCCCATGCAAGAAATGGTGGAGTGGGAGCACATGAGTCAAGTAGATGGAAAGATGCATGCTTGTGGTCATGATGCTCATACTACAATGCTTCTTGGTGCTGCTAAGATTCTCAAACAGCATGAAAATGAGATTAAGGGAACTGTTGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGCTGCAGGGGCTAAGAAAATTGTTGAATCTGGAGCCTTGGAAAATGTATCTGCTATCTTTGGATTGCATGTGCTACCTACGCTTCCAGTAGGTGAAGTGGCTTCTAGATCTGGTCCTTTAATGGCAGGGTCTGGTCGGTTTGAAGCAATTATCAATGGAAAGGGAGGTCATGCAGCTATTCCTCATACTGCTGTTGACCCGATTTTGGCGGCTTCGAATGTAGTTATTAGCTTACAATACCTTGTTTCTCGCGAGGCTGATCCTTTGGACTCCCAGGTTGTGACGGTTGCAAAGTTTCAAGCTGGGAGTGCATTCAATGTTATTCCAGATTATGTCACAATTGATGGAACCTTTAGAGCTTTTACCACAGAAAGCTTGGAGTACCTGAGACACCGCATTGAGCAGGTTATCGTTGGACAAGCAGCTGTGCAGAGGTGCAATGCAACTGTCAACTTCCATGATGAAGTGAATCCTTCCTATCCTCCAACTATAAATGATGATGGCTTGCACGAGCAGTTTCGAGATGTTGCGGTGAATTTGCTCGGTGCAGATAAAGTTCACATTGACATGCCGCCAATGACGGCTTCTGAAGACTTCTCATACTATCAAAAGGTCATGTCTGGCTACTTCTTTTTTCTTGGGATTCAGAAGGATCACCGGCCTCATTTTTTGCACTCACCGTATCTCATGATCGATGAAGAAGGTCTTCCTTATGGAGCTGCACTTCATGCCTCATTAGCTATTAATTATCTTCAAAAACATCAGCAACAAGGACCAACGGGGGAAGGGAAATTTCGTGATGAAAGGAAGATACATCAGTTTCCTGAATTGGCCTATCAAGAATTTCAAACCAGTGAAGTAATAAGAGGGGAATTGGATAAGTTGGGGATCCCCTATAAACACCCTGTTGCAGAAACTGGTGTTATTGGCTTCATAGGGTCTGGAAAGCCACCTTTTGTTGCTTTAAGAGCTGATATAGATGCTCTTCCTATGCAGGAAATGGTGGAGTGGGAGCACATGAGTAAAGTACCTGGAAAGATGCACGCTTGTGGTCATGATGCTCATATTACCATGCTTCTTGGTGCTGCAAAGATTCTCAAACAAGAAAAAGAGATAAAAGGAACTGTTGTTCTAGTTTTCCAACCAGCAGAGGAAGGAGGTGCAGGGGCTAAGAAAATTTTAGATTCTGGAGCCTTGGAAAATGTATCTGCTATCTTTGGATTGCATGTGTTACCTACGCTTCCAGTAGGTGAAGTTGGCTCCAGGTCTGGTCCTATAATGGCAGGATCTGGTCGCTTTGAAGCAAAAATAAGTGGAAGGGGAGGTCATGCAGCTATTCCTCAACATTCTATAGATCCCATATTGGCAGCTTCTAATGTAATTATTAGCTTACAACACCTTGTTTCTCGTGAGGCTGATCCTTTGGACTCTCAGGTTGTGACTGTTGCAAAGTTTCAAGGAGGTGGTGCATTTAATGTTATTCCAGATTATGTCACAATTGGTGGAACCTTCAGAGCTTTTTCCACAGAAAGCTTTGGGTACCTGAAACAGCGCATTGAGCAGGTTATCATTGGACAAGCTGCTGTGCAGAGGTGCAATGCAACTGTCAACTTCTTTGGTGAAGTGTATCCTCCCTATCCTCCAACCATAAATGATGGTGGCTTGCATGAGCAATTTCGTTATGTTGCGATAAATTTGCTCGGTATTGATAAAGCTCACATTGACATGCCACCGATGACAGCTGCTGAAGACTTTTCGTTCTATCAAAAGGTGATGCCTGGCTACTTCTTTTTTCTTGGAATGCAGAAGGATCACCGGGATCATTTTTTGCACTCACCGTATCTCATGATCGATGAAGAAGGACTTCCTTATGGAGCTGCACTTCATGCATCATTAGCTATTAATTATCTTCAAAAATATCACCAAGACAGACCCATGGAAGAAGGGAAAAATCGTGATGAATTATAA 2493 0.4288 MASFKCFHFFIITLQVFAAIPIFSLADSSFTQNQLFTKFLDTAKKPELFDWMLTIRRKIHQFPELAYQEFQTSEVIRAELDKLGIPYKHPVAETGVIGFIGSGKSPFVALRADIDALPMQEMVEWEHMSQVDGKMHACGHDAHTTMLLGAAKILKQHENEIKGTVVLVFQPAEEGAAGAKKIVESGALENVSAIFGLHVLPTLPVGEVASRSGPLMAGSGRFEAIINGKGGHAAIPHTAVDPILAASNVVISLQYLVSREADPLDSQVVTVAKFQAGSAFNVIPDYVTIDGTFRAFTTESLEYLRHRIEQVIVGQAAVQRCNATVNFHDEVNPSYPPTINDDGLHEQFRDVAVNLLGADKVHIDMPPMTASEDFSYYQKVMSGYFFFLGIQKDHRPHFLHSPYLMIDEEGLPYGAALHASLAINYLQKHQQQGPTGEGKFRDERKIHQFPELAYQEFQTSEVIRGELDKLGIPYKHPVAETGVIGFIGSGKPPFVALRADIDALPMQEMVEWEHMSKVPGKMHACGHDAHITMLLGAAKILKQEKEIKGTVVLVFQPAEEGGAGAKKILDSGALENVSAIFGLHVLPTLPVGEVGSRSGPIMAGSGRFEAKISGRGGHAAIPQHSIDPILAASNVIISLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDYVTIGGTFRAFSTESFGYLKQRIEQVIIGQAAVQRCNATVNFFGEVYPPYPPTINDGGLHEQFRYVAINLLGIDKAHIDMPPMTAAEDFSFYQKVMPGYFFFLGMQKDHRDHFLHSPYLMIDEEGLPYGAALHASLAINYLQKYHQDRPMEEGKNRDEL* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1464 830 PANTHER AUXIN CONJUGATE HYDROLASE 7 443 - -
Lja3g1464 830 SUPERFAMILY Bacterial exopeptidase dimerisation domain 218 327 IPR036264 -
Lja3g1464 830 SUPERFAMILY Bacterial exopeptidase dimerisation domain 603 722 IPR036264 -
Lja3g1464 830 Pfam Peptidase family M20/M25/M40 496 808 IPR002933 GO:0016787
Lja3g1464 830 Pfam Peptidase family M20/M25/M40 109 422 IPR002933 GO:0016787
Lja3g1464 830 TIGRFAM amidohydrolases: amidohydrolase 444 799 IPR017439 GO:0016787
Lja3g1464 830 TIGRFAM amidohydrolases: amidohydrolase 52 413 IPR017439 GO:0016787
Lja3g1464 830 CDD M20_IAA_Hyd 52 426 IPR044757 GO:0009850|GO:0016787
Lja3g1464 830 CDD M20_IAA_Hyd 444 812 IPR044757 GO:0009850|GO:0016787
Lja3g1464 830 PANTHER AUXIN CONJUGATE HYDROLASE 443 830 - -
Lja3g1464 830 SUPERFAMILY Zn-dependent exopeptidases 47 428 - -
Lja3g1464 830 Gene3D Zn peptidases 53 410 - -
Lja3g1464 830 Gene3D Zn peptidases 444 796 - -
Lja3g1464 830 PANTHER PEPTIDASE M20 FAMILY MEMBER 7 443 IPR017439 GO:0016787
Lja3g1464 830 PANTHER PEPTIDASE M20 FAMILY MEMBER 443 830 IPR017439 GO:0016787
Lja3g1464 830 Gene3D - 217 335 - -
Lja3g1464 830 Gene3D - 603 721 - -
Lja3g1464 830 SUPERFAMILY Zn-dependent exopeptidases 444 813 - -
Lja3g1464 830 Pfam Peptidase dimerisation domain 218 312 IPR011650 -
Lja3g1464 830 Pfam Peptidase dimerisation domain 604 698 IPR011650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1464 Lja-Chr3 15493070 15502148 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1464 K21604 K14664 gmx:121172631 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1464 3 15493070 15502148 Lja3g1464 3 15493070 15502148 ECH