Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1458 ATGGCAATGCTTCTTGCACCTCGAAATACCATAGAAAATATTGACATGGATGTTCAGAAACTGAGTTCTGATACATCTTTTCAGTCATACCAATCTAAAATACCCTCCCAATTCATATGGCCTGACCATGAAAAGCCATGCCTAAAACCACCAGAGCTCGAAGTTCCAACTATTGATTTGCGGGCCTTTCTCTCTGGAAACCCACAAGCCTTGTCAACTGTTTGTTCAAAAGTGAATGAGGCATGCAAGAAGCATGGTTTCTTTCAGGTTGTTAACCATGGAGTTGATGCAAAGCTCATAGCTCAAGCTCATAAGCTCATAGATGATTTCTTCGGCATGCAACTCTCACAGAAGCAGAGGGCTCAGAGAAAGATTGGAGAACATTGTGGGTATGCTAATAGCTTCATTGGAAGATTCTCCTCCAAACTTCCTTGGAAGGAAACACTTTCTTTCCGTTACTCTGCTGATAAGTCCAGAAAAACAGTGGAGGAGTATTTTGTCAATGTCATGGGGGATGATTTCAGGCAATTTGGGAGTGTGTACCAAGACTACTGTGAAGCAATGAGCAATCTCTCCCTTGAGATCATGGAGCTTCTTGGGACGAGCCTAGGAGTTGGCAGGGAACATTTCAGAGATCTCTTTGAAGGACATGACTCCGTAATGAGACTGAACTACTACCCACCATGTCAAAACCCTGAGTTAGCTTTAGGGACTGGGCCTCATTGTGACCCTACCTCCCTAACCATTCTCCACCAAGATCAAGTTAAGGGTCTCCAAGTTTTTGTGGATGGAAGTTGGCACTCCGTTACTCCCAAAGAAGATGCGTTCGTTGTCAACATTGGTGACACATTTATGGCTCTATCAAATGGGATTTTCAAGAGTTGCTTGCATAGAGCAGTTGTGAATAGCAAAGTTGTGAGAAAATCACTTGCTTTCTTTCTATGTCCAAGTGCAGACAAAGTGATCACACCTCCAAAAGAACTGGTTAACAGGGAGAATCAGAGAATATATCCTGAGTTCACATGGCCAAGTCTCCTTGAATTTACACAGAAGCATTACAGGGCTGACACAAGAACCCTTGATGCTTTCTCAAGGTGGCTACAAGAGAAAAAACAACTAACAAGCATTACTATGTCTTAA 1140 0.4281 MAMLLAPRNTIENIDMDVQKLSSDTSFQSYQSKIPSQFIWPDHEKPCLKPPELEVPTIDLRAFLSGNPQALSTVCSKVNEACKKHGFFQVVNHGVDAKLIAQAHKLIDDFFGMQLSQKQRAQRKIGEHCGYANSFIGRFSSKLPWKETLSFRYSADKSRKTVEEYFVNVMGDDFRQFGSVYQDYCEAMSNLSLEIMELLGTSLGVGREHFRDLFEGHDSVMRLNYYPPCQNPELALGTGPHCDPTSLTILHQDQVKGLQVFVDGSWHSVTPKEDAFVVNIGDTFMALSNGIFKSCLHRAVVNSKVVRKSLAFFLCPSADKVITPPKELVNRENQRIYPEFTWPSLLEFTQKHYRADTRTLDAFSRWLQEKKQLTSITMS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1458 379 Gene3D - 17 354 IPR027443 -
Lja3g1458 379 PRINTS Isopenicillin N synthase signature 78 95 - -
Lja3g1458 379 PRINTS Isopenicillin N synthase signature 241 262 - -
Lja3g1458 379 PRINTS Isopenicillin N synthase signature 276 302 - -
Lja3g1458 379 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 25 368 - -
Lja3g1458 379 PANTHER GIBBERELLIN 20-OXIDASE 25 368 - -
Lja3g1458 379 Pfam 2OG-Fe(II) oxygenase superfamily 218 316 IPR044861 -
Lja3g1458 379 SUPERFAMILY Clavaminate synthase-like 27 356 - -
Lja3g1458 379 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 216 316 IPR005123 -
Lja3g1458 379 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 159 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1458 Lja-Chr3 15406257 15408832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1458 32 354 Glycosyltransferase AT5G59530 29.217 2.05e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1458 K05282 - gmx:100775693 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1458 3 15406257 15408832 Lja3g1458 3 15406257 15408832 ECH