Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1457 ATGGCAGTTCAAAACCACCACTCCAGCAGCAGCACTGAACACCTCCCAAAAGTCCTCCTCTACGGTCCCCCATCACTCTCCTCCATCATCAAACCCCACCCTTCTCACAATTTCCAAATCCTAAACCAATTCTTACCCACCCACGCCTCCTCCATCCACGCCGTCGTTACCACCGACGTCAGCTTCCTCGTCAATGCCGATCTCATCGGACTTCTCCCCTCACTCCGTCTCGTCGTCACTGGCAGCGCCGGAACTGATCACGTTGACCTCTCCGAGTGCCGCCGCCGTGGAATCCAGGTCGCCTCCGCCGGGAACCTCTACTCCGATGATGTCGCCGACTTGGCCGTGGCTTTGCTGATCGACGTCACGTGGAAAATCTCCGCCGCCGATACAAATTTCAGAAGACGGCTTCAGCCTCCGTCATGGGATTTTCCATCTTCTTCTAAGTTGGCTGGAAAAAAAGTTGGAATTGTTGGCTTGGGAAAAATTGGCTTGGAAGTGGCAAAGAGGCTTGAGGCGTTTGGTTGCACTATATTATACAACTCCAGGAACAAAAAACCATTTGTTTCATACCCTTTCTATTCTAGTGTTGTTGAGCTTGCTTCTAACAGCAATGTGCTTGTTCTCTGTTGTGACCTAAACGACCAAACAAAGCACATTATCAACAGAGAAGCTATGTTGGCACTGGGAAAAGAAGGAATTATAGTGAATGTTGGAAGAGGATCTCTTATAGATGAAAGGGAATTGTTGAAATGTTTGATGGAAGGGGAGATTAGAGGTGCTGGTTTGGATGTGTTTGAGAATGAGCCTCAAGTTCCTAAAGAGTTCTTCTCCTTGGACAATGTAGTCCTATCACCACATGCTGCTGTGTTAACTTTTGAGTCTCTCATTGGTATCAGCCAACTTATGGAGCGCAATTTGCAAGCTTTCTTTTCAAACAAGCCTCTGCTTACTCCCTCAAGTCAAACATGTCCCTCCCGACTAGGCACCCAAACACCCACCATTCCAATTTCCAACCCTTCAATGGCAGAAGACCTCCCAGAAGTGCTTGTTCTGGGTCCTCCAACATGCTTCCCAACACTTGAACCACTCTACTCTCACAAATTCCACTTCCTAAACCACCATGCCTCAGGCCTCCCTCTACACCAATTCTTGGTTGCCCATTCTTCAATTCGTGCCATACTCTGCAGCACCACCATCCCCCTCACCGCCGATCTGCTCCGCCTCGTTCCGTCGCTCCGCCTCATCGTCACCTCCAGCAGCGGAACTAATCATATCGACCTCAATGAGTGCCGCCGCCGGGGAATTCTGGTCGCCGACAATGGTGGTGCGGCCTCGGAGGATGTGGCTGACATGGCGGTGGCACTGCTGATTTCCGTCATGAGGAAATTATCGGCGGCGGATCGATACGTAAGGACACGAAATTCCTCTGACCCTTGGGATTTTCCTCTTGGCTGCAAGTTATCAGGCAAGCGAGTTGGGATTATTGGATTGGGAAACATTGGCATGGAAGTGGCCAAGCGGCTTGAGTGTTTTGGTTGCATTATCTTGTACCACTCTAGGCATAAAAAAACACATGTTTCATACCCTTTCTATTCCAGTGTTGTTGAGCTTGCAACTACTAGTGATGCGCTTGTGGTGTGTTGTGCATTGAATCAGCAAACACATCACATAATCAACAGGGAAGTGATTCTGGCATTAGGAAAAGGAGGGTTCATTGTCAATGTTGGAAGAGGGGGGCTTATTGATGAGAAGCAATTGGTGAAGTGTTTAATGGAAGGAGAAATTGGAGGTGCTGGTTTGGATGTGTTTGAGAACGAGCCTCATGTTCCTCAAGAGCTCCTTGCAATGAATAATGTAGTGTTATCTCCACATTGTGGTAGTCTTACTGTAGAAAACAGGATTAGTCTGTCTGAACTTTTGGCAGGGAATTTAGAAGCCTTCTTCTCAAATAAGCCCCTAATTACTCCAGTGAAGTTGGTTGAATAA 1989 0.4806 MAVQNHHSSSSTEHLPKVLLYGPPSLSSIIKPHPSHNFQILNQFLPTHASSIHAVVTTDVSFLVNADLIGLLPSLRLVVTGSAGTDHVDLSECRRRGIQVASAGNLYSDDVADLAVALLIDVTWKISAADTNFRRRLQPPSWDFPSSSKLAGKKVGIVGLGKIGLEVAKRLEAFGCTILYNSRNKKPFVSYPFYSSVVELASNSNVLVLCCDLNDQTKHIINREAMLALGKEGIIVNVGRGSLIDERELLKCLMEGEIRGAGLDVFENEPQVPKEFFSLDNVVLSPHAAVLTFESLIGISQLMERNLQAFFSNKPLLTPSSQTCPSRLGTQTPTIPISNPSMAEDLPEVLVLGPPTCFPTLEPLYSHKFHFLNHHASGLPLHQFLVAHSSIRAILCSTTIPLTADLLRLVPSLRLIVTSSSGTNHIDLNECRRRGILVADNGGAASEDVADMAVALLISVMRKLSAADRYVRTRNSSDPWDFPLGCKLSGKRVGIIGLGNIGMEVAKRLECFGCIILYHSRHKKTHVSYPFYSSVVELATTSDALVVCCALNQQTHHIINREVILALGKGGFIVNVGRGGLIDEKQLVKCLMEGEIGGAGLDVFENEPHVPQELLAMNNVVLSPHCGSLTVENRISLSELLAGNLEAFFSNKPLITPVKLVE* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1457 662 Gene3D - 446 630 - -
Lja3g1457 662 Gene3D - 108 292 - -
Lja3g1457 662 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 344 659 - -
Lja3g1457 662 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 493 520 IPR029752 -
Lja3g1457 662 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 446 628 IPR036291 -
Lja3g1457 662 CDD HPPR 347 650 - -
Lja3g1457 662 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 108 289 IPR036291 -
Lja3g1457 662 PANTHER GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE HPR3 12 319 - -
Lja3g1457 662 Gene3D - 384 653 - -
Lja3g1457 662 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 42 134 - -
Lja3g1457 662 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 12 319 - -
Lja3g1457 662 CDD HPPR 44 312 - -
Lja3g1457 662 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 47 316 IPR006139 GO:0016616|GO:0051287
Lja3g1457 662 Gene3D - 42 315 - -
Lja3g1457 662 PANTHER GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE HPR3 344 659 - -
Lja3g1457 662 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 382 658 IPR006139 GO:0016616|GO:0051287
Lja3g1457 662 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 349 475 - -
Lja3g1457 662 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 454 627 IPR006140 GO:0051287
Lja3g1457 662 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 117 289 IPR006140 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1457 Lja-Chr3 15398894 15405937 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1457 - K15919 lja:Lj3g3v2720150.2 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1457 3 15398894 15405937 Lja3g1457 3 15398894 15405937 ECH