Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1428 ATGTTGCAACCCTTCACTACTTGCTTCACCTTTCTCCACCAAAAAACCAAATTCCTCCTCAATCAGTCAAGAAGAAGATCCAACAACAGATTCTCTTCAATTTCTGACTTTTCAGTCTCTTCTTTCCTTCACATGGAGGTTTCTAGCCAGTTTCAACAAGTTTTCAAGTTTATTGATTCCAATGGTGATGGGAAGATATCAGCCACTGAGTTAAGTGAACTGCTTTTATGCCTGGGATCATACAATAAGTGCACAGCAGCTAAAGAAGCTGAGGGCATGGTCAGGGTGTTGGACTTCAATGGAGATGGGTTTGTAGACTTGGACGAGTTCATGGTTGTCATGAATGGCATCAGAGAAGAAATCAATAATGATGTTGGAAGTAGCAAGCAGCAAGAGGATTACCTCATGGATGCTTTTCTTGTATTTGACACTGATAAGAATGGCCTAATCTCACCTAAGGAGCTACGTAGAGTTTTGCTCAATCTAGGATGTGATAGTTGCAGTCTCAGAGATTGTGAGCGTATGATCAAAGGGGTTGATAAGAATGGAGATGGGTTTGTGGATTTTGAAGAATTTCGATCCATGATGAAAACAGGACTTACCAACTAA 609 0.4072 MLQPFTTCFTFLHQKTKFLLNQSRRRSNNRFSSISDFSVSSFLHMEVSSQFQQVFKFIDSNGDGKISATELSELLLCLGSYNKCTAAKEAEGMVRVLDFNGDGFVDLDEFMVVMNGIREEINNDVGSSKQQEDYLMDAFLVFDTDKNGLISPKELRRVLLNLGCDSCSLRDCERMIKGVDKNGDGFVDFEEFRSMMKTGLTN* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1428 202 Pfam EF-hand domain pair 50 114 IPR002048 GO:0005509
Lja3g1428 202 Pfam EF-hand domain pair 133 197 IPR002048 GO:0005509
Lja3g1428 202 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Lja3g1428 202 PANTHER CALCIUM BINDING PROTEIN 25 199 - -
Lja3g1428 202 CDD EFh 50 114 IPR002048 GO:0005509
Lja3g1428 202 ProSiteProfiles EF-hand calcium-binding domain profile. 46 81 IPR002048 GO:0005509
Lja3g1428 202 SMART efh_1 50 78 IPR002048 GO:0005509
Lja3g1428 202 SMART efh_1 171 199 IPR002048 GO:0005509
Lja3g1428 202 SMART efh_1 134 162 IPR002048 GO:0005509
Lja3g1428 202 SMART efh_1 89 117 IPR002048 GO:0005509
Lja3g1428 202 ProSitePatterns EF-hand calcium-binding domain. 59 71 IPR018247 -
Lja3g1428 202 ProSitePatterns EF-hand calcium-binding domain. 180 192 IPR018247 -
Lja3g1428 202 ProSiteProfiles EF-hand calcium-binding domain profile. 167 202 IPR002048 GO:0005509
Lja3g1428 202 Gene3D - 120 201 - -
Lja3g1428 202 ProSiteProfiles EF-hand calcium-binding domain profile. 130 165 IPR002048 GO:0005509
Lja3g1428 202 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 25 199 - -
Lja3g1428 202 CDD EFh 134 197 IPR002048 GO:0005509
Lja3g1428 202 SUPERFAMILY EF-hand 49 197 IPR011992 -
Lja3g1428 202 ProSitePatterns EF-hand calcium-binding domain. 98 110 IPR018247 -
Lja3g1428 202 Gene3D - 12 115 - -
Lja3g1428 202 ProSitePatterns EF-hand calcium-binding domain. 143 155 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1428 Lja-Chr3 15098843 15099793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1428 51 196 EF-hand Containing Proteins AT1G66400 41.096 2.97e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1428 - - gmx:100779339 298.516