Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1414 ATGTCATTGTCCGATTCCGAAACCTCCTATGGCGGTGGTGGCGCGTCCGAGTACAAGCCCTTCCGTCAAATCAGCCGTGACCGATTGTTATATGAAATGCTTAGATCGGCGAAATCAGGGGATTCGAAGGCGTGGAAGGTGCTTATAATGGATAAAGTCACTGTGAAAGTTATGTCACATTCATGTAAAATGGCAGATATTACAGACCAAGAAGTTTCCTTGGTGGAAGACCTTTTCCGGAGAAGGCAACCATTACCATCTATGGATGCTGTTTATTTCATCCAGCCTTCAAAAGAGAATGTGGTCATGTTCTTGTCTGATATGTCTGGAAGGGAGCCCCTATACAGGAAAGCCTATGTATTTTTCAGTTCACCAATCCCAAAGGAACTTGTAAACCACATCAAGTGTGATACAAGTGTCTTACCCCGCATAGGTGCACTGAGAGAGATGAATTTGGAATACTTTCCGATAGATAGCCAGGCATTTACCACGGATCAAGAAACAGCAATGGAAGAACTTTATGGCAATACTGAGAATACTCGCAGATTTAATGCTTTCATGAATAATATGGCAATTCGAATAGCTACAGTTTTTGCTTCTTTGAAGGAGCTACCTTATGTGTGGCATCGTGCCGCAAAGGAAAGTGACGAGTCTACACCAACAGCAAGTCGTGAATTAATTCCTACCAAGCTTGCTAGTGCAGTGTGGGACATGGTTTCTAAATATAAATCTACCATTCCCAACTTTCCACAAAATGAAACATGTGACCTGCTCATTATTGATAGATCCATAGATCAGATTGCTCCTGTCATTCATGAATGGACCTATGATGCTATGTGTCATGATTTGTTGGATATGGATGGAAATAAATATGAGATTGAGGTTCCTAGCAAAACTGGGGGTCCACCTCAAAAAAAGGAGGTCCTTTTAGAAGACCATGATTCAGTGTGGCTTGAACTTCGCCATACACATATAGCTGATGCTAGTGAAAGACTGCATGAAAAGTTCACCAACTTTGTATCCAAGAACAAAGCAGCACAAATCCAACAAAGTGGAAGAGATGGTAGTGAATTATCTACACGAGATTTGCAAAAAATGGTACAAGCTTTGCCCCAATACACTGAGCAAGTGGAAAAGATTTCACTCCATGTAGAGGTAGCCGGAAAGATCAACAAAATCATCAGAGATACAGATCTTCGAGAGCTTGGACAGTTGGAGCAAGATCTTGTTTTCGGGGATGCTGGAGCCAAGGAGGTTATTATGTTTTTAAGGACAAAGCAGAATACAACTCCAGAATATAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTACAAAGCTAATGCAGTTGGCAAAACTATCACCTGATGACATGAAAGTTATCAGTAATATGCAACTGCTGGGGGGACCATCAAAGAATAAGTCATCTGCTAGCAGTTTCTCACTGAAGTTCAGTAACCAGAAGACAAAGCAAGGAGCACGTAAAGATCGTACTGAAGAGGAGGAGGAAACATGGCAACTATTTCGATTTTATCCCGTGATCGAGGAGCTCATTGAAAACCTTAATAAAAGTGAATTACCAAAGAATGAATATTCATGTATAAACGAACCAAGCTCTGCTGCCCGATCAGGGGGCTCTGTTAGAAACGTCCCACAACGAACCCAGGCAGCTCCAACTGCTGCTCCTCATTCAATGAGATCTAGGCGGACAGCAAACTGGGCACGATCTCGTGCTTCTGACGATGGATATTCAAGTGACTCCACGTTGAAGAGCATGTCTACTGATTTCAAGAAGATGGGAAAGCGAATCTTTGTTTTTATTATTGGCGGCGCAACTCGATCTGAGCTGCGAGTTTGCCACAAATTGACATCAAAACTAAAGAGGGAAGTAATCCTAGGTACTACTTCCGTTGATGATCCTCCACAATATCTTACGAAATTGAAGTTATTGGGTGACAACAATATTGGAATGGATGGACTCCGGCTATAG 2019 0.42 MSLSDSETSYGGGGASEYKPFRQISRDRLLYEMLRSAKSGDSKAWKVLIMDKVTVKVMSHSCKMADITDQEVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYRKAYVFFSSPIPKELVNHIKCDTSVLPRIGALREMNLEYFPIDSQAFTTDQETAMEELYGNTENTRRFNAFMNNMAIRIATVFASLKELPYVWHRAAKESDESTPTASRELIPTKLASAVWDMVSKYKSTIPNFPQNETCDLLIIDRSIDQIAPVIHEWTYDAMCHDLLDMDGNKYEIEVPSKTGGPPQKKEVLLEDHDSVWLELRHTHIADASERLHEKFTNFVSKNKAAQIQQSGRDGSELSTRDLQKMVQALPQYTEQVEKISLHVEVAGKINKIIRDTDLRELGQLEQDLVFGDAGAKEVIMFLRTKQNTTPEYKLRLLMIYASVYPEKFEGDKATKLMQLAKLSPDDMKVISNMQLLGGPSKNKSSASSFSLKFSNQKTKQGARKDRTEEEEETWQLFRFYPVIEELIENLNKSELPKNEYSCINEPSSAARSGGSVRNVPQRTQAAPTAAPHSMRSRRTANWARSRASDDGYSSDSTLKSMSTDFKKMGKRIFVFIIGGATRSELRVCHKLTSKLKREVILGTTSVDDPPQYLTKLKLLGDNNIGMDGLRL* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1414 672 Gene3D - 154 277 IPR027482 -
Lja3g1414 672 MobiDBLite consensus disorder prediction 479 498 - -
Lja3g1414 672 PIRSF VPS45_Sec1 16 667 IPR001619 GO:0016192
Lja3g1414 672 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 278 394 IPR043127 -
Lja3g1414 672 Gene3D - 518 642 IPR027482 -
Lja3g1414 672 PANTHER PROTEIN TRANSPORT SEC1A 22 660 - -
Lja3g1414 672 MobiDBLite consensus disorder prediction 547 599 - -
Lja3g1414 672 Gene3D - 398 517 - -
Lja3g1414 672 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 22 660 IPR001619 GO:0016192
Lja3g1414 672 SUPERFAMILY Sec1/munc18-like (SM) proteins 21 663 IPR036045 -
Lja3g1414 672 Pfam Sec1 family 46 654 IPR001619 GO:0016192
Lja3g1414 672 MobiDBLite consensus disorder prediction 479 510 - -
Lja3g1414 672 Gene3D - 15 149 IPR043154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1414 Lja-Chr3 15000366 15009732 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1414 K15292 - gmx:100783301 1140.95