Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1379 ATGGTGAACATGTCTGGGATCTTGGCATTTTTTGTTGGTCTTGTTATGGTGGGGTTGGTTTCCTCTGCCAAGTTTGATGAACTCTTCCAGTCTAGCTGGGCTCTTGACCATTTCATCCATGAAGGAGAACAAATCAAACTCCAACTTGACAAATATTCTGGTGCGGGATTTGAATCAAAGAAAAAGTACATGTTTGGTAGAGTGAGCCTTAATCTTAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTTACTGCTTTCTATATGTCATCAGAGGGAGCAAATCACAATGAATTCGATTTCGAGTTTCTGGGAAACACCACAGGTGAACCTTACTCAGTCCAGACCAACGTTTATGTGAACGGAGTTGGTAACAGAGAGCAGAGACTCAACCTCTGGTTCGATCCCACCAAGGAGTTCCACTCCTACTCAATCTTCTGGAACCAGCGCCAAGTTGTGTTCCTTGTCGACGAGACTCCAATCAGGGTTCACATGAATCTGGAACACAAGGGAATTCCATTCCCAAAGGACCAAGCCATGGGGGTGTACAGCTCGCTGTGGAATGCTGATGATTGGGCTACACAAGGGGGGCGCGTGAAGACAGATTGGAGCCATGCACCGTTTGTTGCTACCTACAAGGATTTTGAGATCAATGCTTGTGAGTGTCCGGTGCCGGTGACGGCGGCGGAGAATGCGAAGAGGTGTAGCAGCAGTGAGGATAAGAGTTATTGGTGGGATGAGCCAACGATGTCGGAGCTGAGCTTGCACCAGAGCCACCAGCTCTTGTGGGTTAGGGCGAACCATATGGTGTATGATTATTGTAGTGACACTGCTAGGTTTCCGGTCACGCCTGCTGAGTGTGTCCACCACCGTCATTAG 876 0.4852 MVNMSGILAFFVGLVMVGLVSSAKFDELFQSSWALDHFIHEGEQIKLQLDKYSGAGFESKKKYMFGRVSLNLKLVEGDSAGTVTAFYMSSEGANHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKEFHSYSIFWNQRQVVFLVDETPIRVHMNLEHKGIPFPKDQAMGVYSSLWNADDWATQGGRVKTDWSHAPFVATYKDFEINACECPVPVTAAENAKRCSSSEDKSYWWDEPTMSELSLHQSHQLLWVRANHMVYDYCSDTARFPVTPAECVHHRH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1379 291 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 239 286 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lja3g1379 291 Pfam Glycosyl hydrolases family 16 28 203 IPR000757 GO:0004553|GO:0005975
Lja3g1379 291 PIRSF EndGlu_transf 1 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lja3g1379 291 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 211 IPR000757 GO:0004553|GO:0005975
Lja3g1379 291 PRINTS Glycosyl hydrolase family 16 signature 131 148 IPR008264 GO:0004553|GO:0005975
Lja3g1379 291 PRINTS Glycosyl hydrolase family 16 signature 113 126 IPR008264 GO:0004553|GO:0005975
Lja3g1379 291 PRINTS Glycosyl hydrolase family 16 signature 55 73 IPR008264 GO:0004553|GO:0005975
Lja3g1379 291 CDD GH16_XET 21 286 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lja3g1379 291 Gene3D - 14 291 - -
Lja3g1379 291 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 290 IPR013320 -
Lja3g1379 291 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 20 289 IPR044791 GO:0004553
Lja3g1379 291 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1379 Lja-Chr3 14594763 14596620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1379 55 291 Glycoside Hydrolase AT4G03210 76.371 6.11e-143 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1379 K08235 - gmx:100801567 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1379 3 14594763 14596620 Lja3g1379 3 14594763 14596620 ECH
Lja3g1379 3 14594763 14596620 Lja3g1379 3 14594763 14596620 PCT