Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1373 ATGCCTCAAGCTCCTAAACACTTGCATAACATAACAAATAGCAATACTAATACCACCCATGACAACAATAAAAGAGCACTCAAATTCATTGAAGAGGTCACCAGCAACACAGATGAGATTCAAACAAAGGTCCTTTCCCAGATCCTTTCTCGCAGTGCCCAAGTTGAGTACCTCCAACGCCAGGGCCTAGATGGTCATACAGACAGAAACACTTTCAAGAAGGTCATGCCTGTGGTCACTTACGAGGACCTCAAGCCAGATATTGATCGCATAGCTAATGGTGATGCCTCCCCAATTTTGTGTTCCAAACCCATATCAGAGTTTCTCACTAGCTCTGGAACCTCTGGTGGGGAGAGAAAACTGATGCCAACAATTGAGGAAGAGCTAGAGAGGAGGTCATTGCTCTATAGCCTATTGATGCCAGTGATGGACCAATTTGTTCCTGGTTTGGACAAAGGCAAAGGGATGTACTTTCTGTTCATAAAATCAGAAGCCAAAACCCCTGGTGGACTCTTAGCTCGTCCAGTTTTAACCAGCTATTACAAATCCTCACATTTCAAGCACCGCAAAAGCGATCCTTACACCAACTACACCAGCCCCAATGAGACCATCCTCTGCACAGATTCCTATCAGAGCATGTATGCTCAATTGCTCTGTGGACTCTGTCAAAACGAGGATGTTCTTCGTGTTGGGGCTGTCTTCGCTTCTGGTTTCATCCGCGCCATTAAGTTCCTCGAAAAGCATTTATTTTACTTATGCCATGACATTAAAACAGGCACCTTGGACCCCAAAATCACTGACCCTTCTGTGAGAGAAGCTGTCTTGAAAATACTCAAACCAGATCCTAAACTCGCGCGTTTTATTGAATCCCAATGCAGCAATGGATCATCATGGAAGGGGATTATTACTAGGTTATGGCCAAACACCAAGTATGTTGATGTTATTGTCACAGGAGCAATGTCTCAGTACATTCCTATATTGGACTATTACAGTAACAATCTCCCTCTTGTCTGCACCATGTATGCTTCTTCTGAGTGCTATTTTGGCTTGAATTTAAACCCTTTGTGTGACCCTAGTGAGGTTTCTTACACCCTCATTCCCACCATGGCCTATTTTGAATTCTTGCCACTGAACAAGGTAAATGAACATGCTGACTCAATTTCTCACTTGGAACAAGAAAATTTAGTGGATCTTGCTGATGTGAAATTGGGTCAAGAGTATGAGCTTGTTGTCACCACTTATGCAGGTCTTTACAGGTACCGGGTTGGTGACATACTCCGTGTAGCTGGATTCAAGAACAAGGCTCCACAATTCAACTTTGTATGCAGAAAGAACGTGGTTCTGAGCATTGATTCTGACAAAACCGATGAAGTTGAGCTGCAAAACGCTGTGCAGATTGCTGCTGAGAATCTTGTTCAGTTTGGTGCATCCCTTATTGATTACACAAGCTGTGTGGACACGTCTACAATCCCTGGTCATTACGTTCTGTATTGGGAGATTAACATGAACAATGGGGATACCCCTGTTCCTGGTTCTGCTTTTGAAGAGTGTTGTGTTGCACTTGAAGAATCTCTAAACAGTGTGTATCGTCAGGGCAGGGTATCAGAGAGTATTGGAGCGTTGGAGATCAAGGTGGTGGAGAATGGGACATTTGATAAGCTCATGGATTTTGCTCTGAGCCAGGGTGCTTCTATAAATCAGTACAAGACACCTCGTTGTGTGAAATTTGCACCACTTGTTGAGCTTCTGAATTCAAGAGTTGTTTCCAGTTACTTCAGTCCTAAATGTCCAAGATGGATTCCTGGTCGCAAGGAGTGGTGCACTTGA 1827 0.4379 MPQAPKHLHNITNSNTNTTHDNNKRALKFIEEVTSNTDEIQTKVLSQILSRSAQVEYLQRQGLDGHTDRNTFKKVMPVVTYEDLKPDIDRIANGDASPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMDQFVPGLDKGKGMYFLFIKSEAKTPGGLLARPVLTSYYKSSHFKHRKSDPYTNYTSPNETILCTDSYQSMYAQLLCGLCQNEDVLRVGAVFASGFIRAIKFLEKHLFYLCHDIKTGTLDPKITDPSVREAVLKILKPDPKLARFIESQCSNGSSWKGIITRLWPNTKYVDVIVTGAMSQYIPILDYYSNNLPLVCTMYASSECYFGLNLNPLCDPSEVSYTLIPTMAYFEFLPLNKVNEHADSISHLEQENLVDLADVKLGQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQNAVQIAAENLVQFGASLIDYTSCVDTSTIPGHYVLYWEINMNNGDTPVPGSAFEECCVALEESLNSVYRQGRVSESIGALEIKVVENGTFDKLMDFALSQGASINQYKTPRCVKFAPLVELLNSRVVSSYFSPKCPRWIPGRKEWCT* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1373 608 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE 15 606 - -
Lja3g1373 608 Pfam GH3 auxin-responsive promoter 30 575 IPR004993 -
Lja3g1373 608 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 15 606 IPR004993 -
Lja3g1373 608 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1373 Lja-Chr3 14373880 14376955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1373 16 593 EF-hand Containing Proteins AT1G23160 50.256 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1373 K14487 - gmx:100818961 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1373 3 14373880 14376955 Lja3g1373 3 14373880 14376955 ECH
Lja3g1373 3 14373880 14376955 Lja3g1373 3 14373880 14376955 PCT