Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1372 ATGGCTGGGATTGGCAAATTAGGAGTTGTTGATTTTGAGGATCTTCTACCGGTGATCGCTGACAAGCTCGGCGGTGAAGGTCTAATGAAGGAGCTTTGCAATGGGTTCCAGTTGCTGATGGACAAGGACAAAGGTGTGATCACTTTGGAGAGTTTAAGGAAAAACTCTGCTCTGATGGGTTTGCAGGATTTGAAGGAGGATGAGCTCGTGAGCATGTTGAGGGAAGGAGATCTTGATGGTGATGGGGCACTCACTCAGATGGAGTTCTGTGTTTTGATGTTCAGATTAAGTCCTCAGTTGATGGAGGAATCGTGGGTTTTGCTTGAACAGGCTCTGCATAGTGAACTCAACAACAAGAACAAAAGTAATTAA 372 0.4516 MAGIGKLGVVDFEDLLPVIADKLGGEGLMKELCNGFQLLMDKDKGVITLESLRKNSALMGLQDLKEDELVSMLREGDLDGDGALTQMEFCVLMFRLSPQLMEESWVLLEQALHSELNNKNKSN* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1372 123 Gene3D - 9 123 - -
Lja3g1372 123 Pfam EF-hand domain pair 44 95 IPR002048 GO:0005509
Lja3g1372 123 ProSitePatterns EF-hand calcium-binding domain. 77 89 IPR018247 -
Lja3g1372 123 PANTHER CALCIUM-BINDING PROTEIN KIC 1 120 IPR044205 GO:0005509
Lja3g1372 123 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Lja3g1372 123 SUPERFAMILY EF-hand 8 93 IPR011992 -
Lja3g1372 123 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1372 Lja-Chr3 14339915 14340778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1372 12 116 EF-hand Containing Proteins AT5G54490 60.377 1.44e-42 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1372 K24345 - gmx:100527206 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1372 3 14339915 14340778 Lja3g1372 3 14339915 14340778 ECH