Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1354 ATGGCTGCTCTCACCTCTCTGTCTTTCTCAGCAGTGACTCAATGCTCAGAAAGAAAAGCCACTCTATCCTCCACTCGTTTCCTTGCTTCCAATTCTGAGGTCTTTAGGATTCGAACCGACTTCTCTTACCATTATGGGGGTGTTCGAGCTTCCAATTCTTCATCTAAAATGGTTATTCAATGCATGTCTTCTGAGACAGATGTTCCTCCCCCTGTTTCCGAGACAAAGTTAAGTTTTCTTAAGGCATATAAGCGACCAATCCCTAGTATCTACAACAATGTCCTGCAAGAGCTGATTGTCCAGCAACATTTAATGAAATACAAGGCATCATACCGGTATGACCCTGTGTTTGCTCTTGGTTTTGTCACTGTATATGATAAACTCATGGAGGGGTACCCTAGTGATGAGGACAGAGATGCCATCTTCCAAGCCTACATCAATGCATTGAAGGAAGACCCAGAACAATACAGAAAAGATGCACAAAAGTTGGAAGAGTGGGCCCGGGCTCAAAACCCAACTTCCCTGGTTGAGTTTTCATCCAAAGAAGGAGAAGTGGAGGGGATCTTAAAGGATATTGCAGTAAGAGCAGGGGGAAAGGGTGAATTCAGTTATAGTCGTTTCTTTGCTGTAGGCCTCTTTCGTCTTCTTGAGTTGGCAAATGCAACGGAACCAACAATTTTGGAAAAGCTTTGCGCGGCTTTGAACATTGACAAAAGAAGTGTTGATCGGGACTTGGATGTGTATCGTAATCTGCTTTCTAGGTTGGTTCAAGCTAAAGAGCTGCTAAGGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCCGAGCCACAGAAGGCTAATGAGGCCGTTACAAAATGTTTGGGGCATCAATTGTCTGTCCTGTAG 894 0.4407 MAALTSLSFSAVTQCSERKATLSSTRFLASNSEVFRIRTDFSYHYGGVRASNSSSKMVIQCMSSETDVPPPVSETKLSFLKAYKRPIPSIYNNVLQELIVQQHLMKYKASYRYDPVFALGFVTVYDKLMEGYPSDEDRDAIFQAYINALKEDPEQYRKDAQKLEEWARAQNPTSLVEFSSKEGEVEGILKDIAVRAGGKGEFSYSRFFAVGLFRLLELANATEPTILEKLCAALNIDKRSVDRDLDVYRNLLSRLVQAKELLREYVDREKKKREERAEPQKANEAVTKCLGHQLSVL* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1354 297 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 287 IPR017499 GO:0010207|GO:0015979
Lja3g1354 297 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 72 273 IPR017499 GO:0010207|GO:0015979
Lja3g1354 297 Coils Coil 248 278 - -
Lja3g1354 297 Hamap Protein Thf1 [thf1]. 66 274 IPR017499 GO:0010207|GO:0015979
Lja3g1354 297 Pfam Thylakoid formation protein 72 276 IPR017499 GO:0010207|GO:0015979
Lja3g1354 297 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1354 Lja-Chr3 14175443 14178352 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1354 - - gmx:100814341 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1354 3 14175443 14178352 Lja3g1354 3 14175443 14178352 ECH
Lja3g1354 3 14175443 14178352 Lja3g1354 3 14175443 14178352 PCT