Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1346 ATGCGGCGGAGAGCGGCGGATTTTCGGAGGCCGGTGCGGAGGAGGGTTCCGGATGTGTTCTGGTGGGCATTGTGCTGCTCAGTGGTTCTTCTGTTCATCTATATTCTGAGTAAAGGGAATCAGATTGAGTCCAGACAGGTTTTGTCCAAGAGAAATTACAAGCATGATAGGATCATGGAAGGCCTTAATATTACTGACGAGATGTTAAGTTCGAACTCAGTTACCAGACAACTTAGTGATCAGATATCCCTAGCAAAAGCTTTTGTTGTCATTGCGAAAGAAAGTAACAATCTCCAATTTGCTTGGGAACTAAGTGCCCAAATCCGCAATTCACAGATTCTCCTTTCAAATGCCGCCACTAGGCGTGCTCCTTTAACAACCAGGGAATCAGAAAGCGCTATCCATGATATGGCATTATTGTTATACCAGGCCCAGCAGCTCCATTATGACAGTGCAACCATGATCATGAGATTCAAAGCAAAAATTCAAACTCTTGAAGAACAGATGAATTCTGTAAATGAAAAGAGTTCAAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAAAGCCTATACTGTCTTGGTGTCCGGTTGACAACAGAGCGGTTCAAAAACCTTAATTTGCAAAAGAAATTGAAGGACAGAAGGCACGCTGAGATGAAGCTTAAGGATAACAATCTTTACCACTTTTGTGTGTTCTCCGATAACATTCTTGCAACATCAGTTGTGGTCAATTCAACTGCAATCAATTCTAAAAATCCAAATATGATTGTTTTCCACCTTGTCACTGATGAAATAAATTATGCTGCGATGAAGGCATGGTTTACCATTAATGATTTTGGTGGGGTGACTGTGGAAGTTCAGAAGTTTGAAGACTTCAGTTGGTTAAATGCTTCATATGTTCCTGTGCTTAAGCAACTTCAAGACTCAGAAATTCAGAGCTACTATTTTTCTGGCAACAGTGATGATGGCAAGACACCTATCAAATTCCGTAACCCGAAATACCTTTCCATGCTTAACCACCTGAGGTTCTATATCCCTGAAGTTTTTCCTGCACTGAAGAAGGTGGTGTTCCTGGATGATGATGTCGTGGTTCAAAAGGATCTTTCTGGTCTTTTTTCCATTGATTTGAACGGGAATGTCAACGGAGCTGTTGAGACATGCATGGAGACATTTCATAGATACCATAAGTACTTGAACTATTCTCATCCACTTATACGTGCACATTTTGATCCTGATGCTTGTGGATGGGCATTTGGGATGAATGTATTTGATTTGGTTCAATGGAGGAAAAAGAATGTAACTGGCATCTACCACTACTGGCAGGAAAAGAATGTAGACCGGACTTTGTGGAAACTCGGTACCTTGCCACCTGGACTGTTGACATTTTATGGACTAACTGAGCCTTTGGACCCATCATGGCATGTATTAGGTTTTGGCTACACAAATGTTGATCCTCAGTTGATAGAGAGAGGTGCTGTACTGCACTTCAATGGGAACTCCAAACCATGGTTGAAGATTGGGATTGAAAAATACAAGCCCTTGTGGGAAAAATTTGTTGACTACTCCCATCCTTTATTGCAACAATGCAACTTCCATTGA 1602 0.4139 MRRRAADFRRPVRRRVPDVFWWALCCSVVLLFIYILSKGNQIESRQVLSKRNYKHDRIMEGLNITDEMLSSNSVTRQLSDQISLAKAFVVIAKESNNLQFAWELSAQIRNSQILLSNAATRRAPLTTRESESAIHDMALLLYQAQQLHYDSATMIMRFKAKIQTLEEQMNSVNEKSSKYGQIAAEEVPKSLYCLGVRLTTERFKNLNLQKKLKDRRHAEMKLKDNNLYHFCVFSDNILATSVVVNSTAINSKNPNMIVFHLVTDEINYAAMKAWFTINDFGGVTVEVQKFEDFSWLNASYVPVLKQLQDSEIQSYYFSGNSDDGKTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSGLFSIDLNGNVNGAVETCMETFHRYHKYLNYSHPLIRAHFDPDACGWAFGMNVFDLVQWRKKNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGFGYTNVDPQLIERGAVLHFNGNSKPWLKIGIEKYKPLWEKFVDYSHPLLQQCNFH* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1346 533 CDD GT8_like_1 228 521 - -
Lja3g1346 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 533 IPR029993 GO:0047262
Lja3g1346 533 Pfam Glycosyl transferase family 8 235 507 IPR002495 GO:0016757
Lja3g1346 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 230 525 IPR029044 -
Lja3g1346 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 228 531 IPR029044 -
Lja3g1346 533 PANTHER GALACTURONOSYLTRANSFERASE 10-RELATED 3 533 - -
Lja3g1346 533 Coils Coil 155 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1346 Lja-Chr3 14071282 14076401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1346 1 533 Glycosyltransferase AT2G20810 79.851 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1346 K13648 - gmx:100792018 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1346 3 14071282 14076401 Lja3g1346 3 14071282 14076401 ECH
Lja3g1346 3 14071282 14076401 Lja3g1346 3 14071282 14076401 PCT