Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1339 ATGGGTGACCTCGAAGAAGACCCTCTTCTTCTCAACGACATTGCCCTCGCCGATTCCTTCATCAATTTCGATTACGCCCCCGACCCTGTGCCCGATCCGAATGGAAACGGGTCCGGGTTGACGCAATCGGGTTGTGCCGGTGGTGGTGGTGGTTGTGGTGGCATTGAGGAAGCCATTGAGAAAATCAGCTTGGTTGGAAGTACTGAGTGTGAGGGGAATGGAAGTGGTGAGGTTAGGGTTGAGACTGAGAATGAGACTGAGGGTGAGGAAGTAGCTGATGTTGAGAGTAAGAGTTTGGTATCTGAGAATGCTGCTACAACGTCGTCTTTAACTTCCTCTGTAACCAGCTCAGGGAGTGATAGTGATGAGAAAGGTGAAGTTGAAGAAGGTGAGATTGTAGATTCTGATGCCTATGATGATAATGATGAGGAGGAGGAGGAGGAGGAGGATGATGATGATGATGATAGCGAAGAAGGTTCTGAGGAGACGGCTAGTAGGGGCGTCCTCGATGATGCTGGAAGACCCGTTATGTCAAAAAACGACGACGAGCTTGAGGTTTTACCTTGGGTTCCTCCTGTGAATGTGACCTTAGGACCACACCATCAAATGCTGCCAGTGGGAGTTGTCATGTCGATTCTTGGTGCTCAAGTCATTGTGGAAGGGGTGGAGAAGCATGACCCTCTTAATGAGGGCTCCATTCTCTGGATGACTGAAAGCCGAAGACCACTGGGATTCATAGAGGAGATCTTTGGACCAGTAGAACATCCTTATTATATTGTGAGATACAATTCTGAGAATGAAGTCCCTGAAGGTATCCGTGGGGGAACTTTAATCTCTTTTGTTCCAGAATTTGCCAATCATGTGCTTCGTGATGAGGAACTTTACAAGAAAGGATACGATGAAGAGGCTTCTGATGACTCAGAATTTTCAGATGATGGGAAAGAGGCCGAGTACAAGAGAATGCAGACAATGGCAAAGAGAGGCATACAAGATCAAAATCCTGGGAAGAGGAAAAACAACAGAAATGAAGTTCCATCAAGAAATGCTTTCGTCCCTACATTACCTGTTGCACCTGCCACATCATTACCTGACCATGGTCATTATTCATCTATTCCAGGACCCGGAGGGCAAGGCCATTTTAGCGCATCTAATGTAAATCCTCCTTATCCTCCAAATGTAGGTCCTAACTTAACTACAAGTGGAGTGGGGACAAGTGGGACAGCACTTCCACAACAGTTTGCAGTGCCTCCTAATGGATTTCCTACAAATGATGTATCATGGTACCAAGGAAATACTCAAAATTTTCATCAGTTCCCCGCACCAGGAATTCCATTTCAACAGCAGCTAAATTCCGTCCATGGGTACCCAAATAATACTCAGATTTCTCATCAGGTTCCAGTACCAGGTATTCCATTTCAACAGCAGTTAAATCCCGTCCATGGGTACCCAGATAATACTCAGATTTCTCATCAGGTTCCCGTAGCAGGAGTTCCATTTCAACAGCAATTAAATCCCATCCATGGTTACCAAGGTAATACTCAGATTTCCCATCAGGTTCCTGTACAAGGAGTTCCATTTCAACAGCAGTTAAATCCTGTCCAAGGGTACCGAGATAATTCTCAAATTTCTCATCAGTTCCCAGCACCACCAGGAGTTCCATTTCAGCAGCAGTTTAATCCTGTCCACGGGTACCCAGATAGTACTCAAATTTCTCAACAGCTTCCCGTACCAGGTTTTCCATTTCAGCAGCAGTTAAATCCAGTTCATGGGTACCCAAACAATACTCAAATTTCTCATCAATTTCCCGTACAAGGAACTCTATTTCAACAGCAGTCAAATCCCGTCAATGGGTTTCCTCCAGCAACTACATTTCCTGGAGCACAGCCCAACATGTTTGCACAACCCATGTATGCTCAGAGGCCTGTGAATCAAAACCAAATCACACCTGGGTTGAGCACACCTTTCCCGCAGGATCAATCACCTATTAATATGCATTCTAGTTTTATTTCAGGCAATCAGCATGCTCCCCATCAATTTAATCCTGGTCCATCTGCTAATTATCGGCGAAAAAAATATAACCGACCGGGTAAGAGAGGTTGGCGACCAGGTAAGTGA 2115 0.4548 MGDLEEDPLLLNDIALADSFINFDYAPDPVPDPNGNGSGLTQSGCAGGGGGCGGIEEAIEKISLVGSTECEGNGSGEVRVETENETEGEEVADVESKSLVSENAATTSSLTSSVTSSGSDSDEKGEVEEGEIVDSDAYDDNDEEEEEEEDDDDDDSEEGSEETASRGVLDDAGRPVMSKNDDELEVLPWVPPVNVTLGPHHQMLPVGVVMSILGAQVIVEGVEKHDPLNEGSILWMTESRRPLGFIEEIFGPVEHPYYIVRYNSENEVPEGIRGGTLISFVPEFANHVLRDEELYKKGYDEEASDDSEFSDDGKEAEYKRMQTMAKRGIQDQNPGKRKNNRNEVPSRNAFVPTLPVAPATSLPDHGHYSSIPGPGGQGHFSASNVNPPYPPNVGPNLTTSGVGTSGTALPQQFAVPPNGFPTNDVSWYQGNTQNFHQFPAPGIPFQQQLNSVHGYPNNTQISHQVPVPGIPFQQQLNPVHGYPDNTQISHQVPVAGVPFQQQLNPIHGYQGNTQISHQVPVQGVPFQQQLNPVQGYRDNSQISHQFPAPPGVPFQQQFNPVHGYPDSTQISQQLPVPGFPFQQQLNPVHGYPNNTQISHQFPVQGTLFQQQSNPVNGFPPATTFPGAQPNMFAQPMYAQRPVNQNQITPGLSTPFPQDQSPINMHSSFISGNQHAPHQFNPGPSANYRRKKYNRPGKRGWRPGK* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1339 704 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 55 532 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Lja3g1339 704 Gene3D Probable tRNA pseudouridine synthase domain 174 281 IPR038664 -
Lja3g1339 704 MobiDBLite consensus disorder prediction 124 160 - -
Lja3g1339 704 MobiDBLite consensus disorder prediction 325 412 - -
Lja3g1339 704 MobiDBLite consensus disorder prediction 99 120 - -
Lja3g1339 704 Pfam Gar1/Naf1 RNA binding region 204 284 IPR007504 GO:0001522|GO:0042254
Lja3g1339 704 MobiDBLite consensus disorder prediction 395 412 - -
Lja3g1339 704 MobiDBLite consensus disorder prediction 690 704 - -
Lja3g1339 704 MobiDBLite consensus disorder prediction 646 680 - -
Lja3g1339 704 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 55 532 - -
Lja3g1339 704 SUPERFAMILY Translation proteins 203 266 IPR009000 -
Lja3g1339 704 MobiDBLite consensus disorder prediction 67 180 - -
Lja3g1339 704 MobiDBLite consensus disorder prediction 646 704 - -
Lja3g1339 704 MobiDBLite consensus disorder prediction 25 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1339 Lja-Chr3 14012058 14015221 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1339 K14763 - aprc:113855898 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1339 3 14012058 14015221 Lja3g1339 3 14012058 14015221 ECH