Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1338 ATGAGTAACTACGACACCAACTCCAACCCCTTCGCCGAAGAAGATGTCAATCCCTTCGCCAACGCAGGAAGCGTTCCCCCTGCAACCTCAAAGCTTAAACCCCTTCCTCCTGAGCCTTATGATCGTGGAGCAACTATTGACATTCCTCTTGATACCTCAAAGGACATCAAGGCAAAGGAGAAAGAACTTCAAGCCAGAGAAGCTGAGTTGAAAAGAAGGGAACAGGAGCTAAAGCGAAAGGAAGATGCTATAGCACGAGCTGGAATAGTTATAGAGGAAAAGAATTGGCCTCCTTTTTTCCCCATCATTCATCATGATATTGCAAAAGAAATACCATTGCATCTTCAAAGGATCCAGTATGTTGCGTTTACAACATGGTTAGGCTTTATCATATGTCTTGTATGGAATATTGTGGCTGTTACTATGGCTTGGATCAAAGGAGAAGGTACGTCAATATGGTTTCTTGCTATCATATACTTCATTGCTGGTGCCCCTGGATCCTATGTGATATGGTATCGCCCTCTTTATCGTGCTATGAGGACAGACAGTGCTCTAAAGTTTGGCTGGTTCTTCCTGTGTTACATTTGGCATGTTGCGTTCTGCATTTTTGCTGCAGTTGCTCCTCCAATTATCTTCAAAGGAAAATCTCTAACAGGTATACTACCTGCGCTTGAGGTGTTGACCTACAATGTATTGGTTGGGGTATTCTACTTAATTGGGTTTGGTTTTTTCACGATAGAATCACTCTTAAGCATCTGGGTTATGCAGCAAGTATACATGTACTTTCGCGGCAGTGGGAAGGCTGCAGAGATGAAGCGCGCGGCTGCGAGAGGGACCATGATGGCAGCTATGTGA 855 0.4433 MSNYDTNSNPFAEEDVNPFANAGSVPPATSKLKPLPPEPYDRGATIDIPLDTSKDIKAKEKELQAREAELKRREQELKRKEDAIARAGIVIEEKNWPPFFPIIHHDIAKEIPLHLQRIQYVAFTTWLGFIICLVWNIVAVTMAWIKGEGTSIWFLAIIYFIAGAPGSYVIWYRPLYRAMRTDSALKFGWFFLCYIWHVAFCIFAAVAPPIIFKGKSLTGILPALEVLTYNVLVGVFYLIGFGFFTIESLLSIWVMQQVYMYFRGSGKAAEMKRAAARGTMMAAM* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1338 284 Pfam SCAMP family 93 264 IPR007273 GO:0015031|GO:0016021
Lja3g1338 284 Coils Coil 53 83 - -
Lja3g1338 284 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 21 284 IPR007273 GO:0015031|GO:0016021
Lja3g1338 284 MobiDBLite consensus disorder prediction 1 47 - -
Lja3g1338 284 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 21 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1338 Lja-Chr3 13995638 13999309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1338 46 284 Miscellaneous Gene Families AT2G20840 79.498 2.79e-138 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1338 K19995 - thj:104814492 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1338 3 13995638 13999309 Lja3g1338 3 13995638 13999309 ECH
Lja3g1338 3 13995638 13999309 Lja3g1338 3 13995638 13999309 PCT