Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1128 ATGTTTAGATTTTCTTGTTTCCATGCTAATGTCCAAGGCCACAAGACAAAGAAAACAGTTCTACCTACTGAAGCAATGGTGAAGGCTTCACAAGATGGTTCCAAAAGTCAAGTCTATAAAGATTCATCTCCCACCAAAAGCTCAAAATCAACACCTTCAAAAGAACAAGTTCATAAGAAAATGAATGTCATTGAGAGTCAAATTAGCAGTTCGGATTCAGTTGAGCGCATTGATAGGTCAGAAGATCTGAATAGCAAGTTTTCCATTGAACTTGAGAGAGAAGCACACCAAACTGGGTGTCTTAAGAAAAGCCAGTCTCTGGGTGGGCTTTACCGAGGCACTACTGAGGGTGATGAAGATCTGGGATTTTCTGGAAATAATTCCCAAGGCTGCTATGATTCTCCTGGTGTTAACTCCATTGATCAATCTGAAAAGAATCCAGACTTTGAGTTTCAAGTCAATTTAGATCTTGCAAATAATGACTCACTTTTTTCAATAGGAGATCCTTCACCTTCCGATAAAGGTGAAATTTCTGAGACTCCATTATCTGGTGAATTAGCTGGTGACTCTGCTGACCAGAATTCTGGTCCCGGGACCCCATCTTTGATGAAATCACGTTCTCTACCAAATATTAAAGCTTCTACACTTTCCCCTGAAAATCATGCTTTCAAACATCCATCTTCAAAGTCAAGGTCTTCTGACGATCTTCATGCTTTAGGCATGAGGAAGAAAGAGGGATTCATCAATGAGTCTGAGGATCAAATAAGGGAAGGTCAAGAGAGGGAGGACAACATTGGAAAAACAGAAGATAATCATATGGGCGAATACTTTGATGATGGTTTTGATTCTTATCTCCTTTCTGATCTAGAAAAAGACTGGGTAATGCCAACTACAGATGATATAAGTGAAGTCAAAACCCTTCAAGGAGATAACTCAGTTGATTGCTTTGGTGAATTCCCTAACAAGGATTTCAAGGTTAAGCGCATTGAGGATTGGGTAGTGGATCTGCAGCATTGCGGACCACCTGTAGAGGAGATAAATGAATTGCCGGAATCCGTTGATCCCGTAGTTGATATTAACACCATAAATGGTGTGACTGCTGCAGGTGTGAATCATAAGATCACTCCAGGAATGGAAGCAGCTAAAAGATATATATCTTCATTGACTGCTAATGCTTCTGCAGCTCAGCTGGCAAATCATGGGTTGGTTGTGGTCCCATTTTTGAGTGCATTTGTGAGTTTGAAGGTGCTCAATTTGGCTGGAAATTCAATAGTAAGGATAACTGCTGGTGCTCTTCCTCGAGGACTTCACTCCTTGAATTTGTCAAGAAATAATATTTCCAGTATAGAGGGACTGCGTGAACTTACCCGGCTTCGTGTCCTTGACCTCAGCTACAACCGTATACTAAGAATTGGACATGGCCTTGCATCCTGTTCATCTCTCAAGGAGCTGTACTTGGCTGGAAACAAGATAGGTGAAGTAGAGGGTCTGCACCGTCTCTTGAAACTAAGTATCCTGGATCTCCGTTTCAACAAAATTTCAACAGCCAAATGTCTCGGTCAGCTTGCAGCTAACTACAATTCTTTGCAAGCTATCAACTTGGATGGGAACCCTTGCCAGAAAAATGTTGGGGATGAACAACTGAAGAAATATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAACAGGCAGGCTATGAAAGTGAGCACTTTGAAGGACGGGGCTGATCGTTTGGTTCGGTTAGGAACGAATGATCGCAGCCTTAGAGTGGATCGCAAGACCACAAGGAAAGGAAGCCATGGCGTTGCGGCTGCGCGGAGACCACCATCCACTTCAACTCATTCTCACAGAAGTCAGACAGTGGAGTCACCGAAACTGTCCAAAGGCAAGCAAAGCCATTTGCCACCAATCAGAACCAAAGTATCAACCCAGAGTCGCCATTATTTGGATGCTCAAAGCAAAGTATTGAACTTGACATCAGGGCACTCCATGCGCAAGAGTCGCAGTGAGGGAACTCTGGGAGCTCTATGA 2034 0.4302 MFRFSCFHANVQGHKTKKTVLPTEAMVKASQDGSKSQVYKDSSPTKSSKSTPSKEQVHKKMNVIESQISSSDSVERIDRSEDLNSKFSIELEREAHQTGCLKKSQSLGGLYRGTTEGDEDLGFSGNNSQGCYDSPGVNSIDQSEKNPDFEFQVNLDLANNDSLFSIGDPSPSDKGEISETPLSGELAGDSADQNSGPGTPSLMKSRSLPNIKASTLSPENHAFKHPSSKSRSSDDLHALGMRKKEGFINESEDQIREGQEREDNIGKTEDNHMGEYFDDGFDSYLLSDLEKDWVMPTTDDISEVKTLQGDNSVDCFGEFPNKDFKVKRIEDWVVDLQHCGPPVEEINELPESVDPVVDINTINGVTAAGVNHKITPGMEAAKRYISSLTANASAAQLANHGLVVVPFLSAFVSLKVLNLAGNSIVRITAGALPRGLHSLNLSRNNISSIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIGEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLQAINLDGNPCQKNVGDEQLKKYLQGLLPHLVYYNRQAMKVSTLKDGADRLVRLGTNDRSLRVDRKTTRKGSHGVAAARRPPSTSTHSHRSQTVESPKLSKGKQSHLPPIRTKVSTQSRHYLDAQSKVLNLTSGHSMRKSRSEGTLGAL* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1128 677 MobiDBLite consensus disorder prediction 607 628 - -
Lja3g1128 677 PANTHER NISCHARIN RELATED 5 676 - -
Lja3g1128 677 SMART LRR_sd22_2 455 477 - -
Lja3g1128 677 SMART LRR_sd22_2 478 499 - -
Lja3g1128 677 SMART LRR_sd22_2 433 454 - -
Lja3g1128 677 SMART LRR_sd22_2 500 524 - -
Lja3g1128 677 SUPERFAMILY Outer arm dynein light chain 1 405 564 - -
Lja3g1128 677 ProSiteProfiles Leucine-rich repeat profile. 457 479 IPR001611 GO:0005515
Lja3g1128 677 MobiDBLite consensus disorder prediction 29 51 - -
Lja3g1128 677 ProSiteProfiles Leucine-rich repeat profile. 435 456 IPR001611 GO:0005515
Lja3g1128 677 MobiDBLite consensus disorder prediction 120 144 - -
Lja3g1128 677 MobiDBLite consensus disorder prediction 187 223 - -
Lja3g1128 677 MobiDBLite consensus disorder prediction 592 647 - -
Lja3g1128 677 MobiDBLite consensus disorder prediction 28 60 - -
Lja3g1128 677 MobiDBLite consensus disorder prediction 118 144 - -
Lja3g1128 677 Pfam Leucine Rich repeat 477 492 IPR001611 GO:0005515
Lja3g1128 677 Pfam Leucine rich repeat 413 468 IPR001611 GO:0005515
Lja3g1128 677 PANTHER BNAA09G01440D PROTEIN 5 676 - -
Lja3g1128 677 ProSiteProfiles Leucine-rich repeat profile. 480 501 IPR001611 GO:0005515
Lja3g1128 677 SMART LRR_typ_2 500 522 IPR003591 -
Lja3g1128 677 SMART LRR_typ_2 455 478 IPR003591 -
Lja3g1128 677 SMART LRR_typ_2 411 434 IPR003591 -
Lja3g1128 677 MobiDBLite consensus disorder prediction 162 272 - -
Lja3g1128 677 MobiDBLite consensus disorder prediction 224 272 - -
Lja3g1128 677 Gene3D Ribonuclease Inhibitor 368 553 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1128 Lja-Chr3 11735927 11740013 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1128 - - gmx:100790061 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1128 3 11735927 11740013 Lja3g1128 3 11735927 11740013 ECH