Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1123 ATGGAAACAAGATCAGCAAAACGCAAGAAAATGGCTCAAATCATGGAGAACGAAGCGAAAGCCGCCGCCACGGATCGGATCAGCGACCTCCCAGACGCCGTCCTCCACCACATTCTCTCCCTCCTCCCGATCAAAACCGCCGCCCAGACGAGCATTCTCTCCAAGAGATGGAAGTTTCTATGGACCACATTCCCCGATCTCGACTTCAGAACCATCGATCCACATGCATTCTCCTCTCGAAATCTGCAATCATCAGATTTCGAAACGTCAGGTCACCCATTAGCTTCAACCATGGATTTCATCACACAAGTACTCTCGACGCGCGACAAGGACTCGGACATTAGGGCTCTTTGCTTCCGCGCCCGGTTAAGCTTTTCGCGGTTGAATAGCTTAATCCGGAGCGCGGTAAGGCACAATGTGAAAGAGCTTGACATCGAAGTCACACCAGAAGTGCGAACAGATGAGTATTTCAATTTTCCAAGATGCTTAATTGCGAGTAAAACTTTGAGGGTTTTGAAATTGAGATCAGGTTTTCGGTTACCTCCTTCATCAATCATGAAAGAAACGTTTCAATCTCTTCACACATTGTCATTGACATTAGGCCCGGTGGATCATCAGGCTCCTTTATCTGATTTGTTTACTGAATCCGCTTTTCCTTTTCTGAGGAACTTGCACCTGCAATTGTGTTTTGGATTGCGAGTTCTTCGCGTTGGTTGTCTCGCTCTTCGTGATTTGAGCTTGGAGAAATGTATTAACCTTCACGGTTTGGATGTTGTCACGCCAAAACTCGAGAGGTTGAGAGTGTCAGAGTGTTTTCACGGGTACCATAATAAGAGTTGGGTGAGGATCAATGCACCGAAGCTTGAGTCGTTGTTTTGGCAGTATAATGCAGTTGCTGATGTTACTGTTTTTGAGCGTTCGAATGTGTTGCATGAGGCTTCCGTTGATTTCGTTTTGGTGATGAGTAAGAATGATAAAGTTAGCATGGATAAGCTTCAAAGTGCCATAAATTTCATGGCTGGATTGTCTTGTGCCCGTTCGTTGACACTTGATAGCAAAACTATAGAGATGCTATCAAATAGCAACTTCTATATTGAGCCATTATATAATCTTAAATCATTAGAGCTGCATACTTGTTTCAACAAAACTAATATTCAGGGATTGGCATGCTTATTCAGGAGCTCTCCCACCCTCCACACACTCATTGTCAAGATCATTGACCATAATAAGTTTGATAGAAAACAGTGGAATAAGGACTTGGACATGACTAGCAATGAAGAAGAGCAGTATTGGGAGTCTGAGATCCCAACTCTGAAGCCTTTTCTGCAACACTTGAAGGTGGTTGAAATTCATGGGTTTCTTGATTGTGAGAATGAAGTTACACTAGCAAAGTTTCTCCTCAAGAATGGGAAGGCCTTAGAAGAGATGGTATATTTCACAGGACATTGTAATACAAGTAGTACTCTTAGGCGACAAAAAGTAAGGCAGCATATGTTGATGGGTGTTTCTTGGGCTTCTTCTAATGCAAAAGTGACGTTTCGGTAG 1545 0.435 METRSAKRKKMAQIMENEAKAAATDRISDLPDAVLHHILSLLPIKTAAQTSILSKRWKFLWTTFPDLDFRTIDPHAFSSRNLQSSDFETSGHPLASTMDFITQVLSTRDKDSDIRALCFRARLSFSRLNSLIRSAVRHNVKELDIEVTPEVRTDEYFNFPRCLIASKTLRVLKLRSGFRLPPSSIMKETFQSLHTLSLTLGPVDHQAPLSDLFTESAFPFLRNLHLQLCFGLRVLRVGCLALRDLSLEKCINLHGLDVVTPKLERLRVSECFHGYHNKSWVRINAPKLESLFWQYNAVADVTVFERSNVLHEASVDFVLVMSKNDKVSMDKLQSAINFMAGLSCARSLTLDSKTIEMLSNSNFYIEPLYNLKSLELHTCFNKTNIQGLACLFRSSPTLHTLIVKIIDHNKFDRKQWNKDLDMTSNEEEQYWESEIPTLKPFLQHLKVVEIHGFLDCENEVTLAKFLLKNGKALEEMVYFTGHCNTSSTLRRQKVRQHMLMGVSWASSNAKVTFR* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1123 514 Gene3D - 7 64 - -
Lja3g1123 514 Gene3D Ribonuclease Inhibitor 78 314 IPR032675 -
Lja3g1123 514 ProSiteProfiles F-box domain profile. 24 72 IPR001810 GO:0005515
Lja3g1123 514 SMART 9598neu4hmm 439 514 IPR006566 -
Lja3g1123 514 Pfam F-box domain 27 62 IPR001810 GO:0005515
Lja3g1123 514 PANTHER F-BOX PROTEIN-LIKE 23 458 - -
Lja3g1123 514 SUPERFAMILY RNI-like 139 453 - -
Lja3g1123 514 Pfam FBD 441 477 IPR006566 -
Lja3g1123 514 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 23 458 - -
Lja3g1123 514 SUPERFAMILY F-box domain 15 76 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1123 Lja-Chr3 11694904 11697078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1123 21 419 EF-hand Containing Proteins AT5G41840 26.559 2.52e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1123 - - ahf:114927451 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1123 3 11694904 11697078 Lja3g1123 3 11694904 11697078 ECH