Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1120 ATGAAGACAACAACAACAACCCTTCTCCGCAATGCTCCTACCCTCACACTCCCCCTCGATTCTCTACAATGCGGAACCTTGTTGCAATCACTCACCAACTCCAAATCATTCACACAAGCCCAGAAACTCCATGCCCACATCATCACCTGCGGCACTCTCCTCCAAAACACCTACCTCTCCACCAAGCTCGCCGCCTGCTACGCCGCCTGTGGCCGCATGCCTCAAGCACAACTCATATTCGATCAAATCGTCTTCAAGAATTCATTCTTATGGAATTCTATGATCAGGGGCTATGCTTGTAGCGCTGGTGGAAACTCGAGCTCGAGGTCCCTTGTTTTGTACCGTGAAATGCTGAGTTTTGGACAGAAGGCTGATAATTTCACCTACCCTTTTGTTCTCAAGGCTTGTGGGGACCTTCTGCTTCGTGAAATGGGGATAAGAGTTCATGGTTTGGTGGTGGTTGATGGGTTGGAGTCGGATGTTTATGTGGGAAATTCTTTGATTTCGATGTATTTGAAATTTGGTGATATGGGAACTGCGAGGTTGGTGTTTGATAAAATGCCTGTGAGGGATTTGACTTCGTGGAACACGATGATGTCGGGGTATGTGAAGAATGGTGAGGCGGGGGATGCTTTTGTGGTTTTTGATCACATGAGAAGATCTGGCTTGGTTGGAGATGGGACCACCATGCTTGCCTTACTCAGCGCTTGTGGTGATCTTATGGATTTGAAGCTGGGGAAAGCGGTTCATGGTTATGTTGTTAGGAATAGTGGGAGACTGTCTAATAATGAGTTTGTGACGAATTCAATGATTGATATGTACTGCAATTGTGATTTCATATCTGGTGCAAGGAAACTATTTGAAGGGTTAGCAGTGAAGGATACTGTATCGTGGAATTCATTGATTTCTGGCTATGAAAAGTGTGGGGGTGCTTTTCAAGTTCTGGAACTTTTCGGTCAAATGTTTATAGGAGGTGCAGTTCCTGATGAAGTGACTGTTATTTCTGTGCTTGGGGCTTGTAGTCGAATCTCGGCCTTGCTATTGGGTTCATCTGTTCACTCATATCTTGTTAAAAAGGGTTATGGAATGAATACTGCTGTGGGAACTTCCCTAATAAGCATGTATGCTAACTGCGGAAGTTTCCTTTGTGCACATCGCGCTTTCAATGAGATTCCTGATAAAAGTTTGGCTTCCTGGACAGTTATGGTTACAGGATTTGGAATTCATGGCAAGGGAAGAGAGGCCATTTCCATTTTCAATGAAATGTTAGGTAAAAATATTACTCCAGATGAGGGCGTTTTCACGGCAGTTTTATCAGCTTGTAGTCATTCTGGATTAGTGGATGAGGGTAAAGAAATTTTCTATAAAATGACCAGAGACTACAATGTGGAGCCTACAACCACTCATTATTCATGTTTGGTGGATCTACTTGGCAGGGCAGGAAAATTAGATGAAGCATATGCAACTATAGACAACATGAAATTGAAACCTAATGAGGATGTTTGGACTGCTCTTCTTTCTGCTTGCAGATTACATCGGAATGTCAAGTTAGCAGAGATATCAGCCCAGAAGCTTTTTGAAATGGATCCAAATAAAGTGAGCGGCTATGTTTGCCTTTCCAACATCTATGCTGCTGAGAAACGGTGGAAGGATGTTCAAAAGGTGAGGAAAAAGGTAACAAAGAAGAGATTGAGGAAACCACCTAGTTACAGTTTTTTTGAGCTAAATAAGATGGTTCATCAATTTTTTGCTGGAGATACGTCCCACCAACAGTCAGATGATATTTATGCCAAACTGAAAGACTTGAATGAGCAACTGAAGAAAGTGGGGTACATGCCTGACACTAGTTCAGTTCTTTATGATGTTGAGGCAGAAGTAAAGGAGAAAATGCTCTGGGATCATAGTGAGAGGTTGGCACTTGCTTTTGCCCTTATTAACACTGGTCCAGGAACCACAATCAGAATAACCAAGAATCTTCGTGTGTGTGTAGATTGCCACACTGTAATGAAAATGGTTTCTAAGCTTATGAGTCGAGAGATTATCATGCGAGATATCTGTAGGTTTCACCATTTTAGAGATGGTATATGCTCATGCGGTGGGTATTGGTGA 2109 0.4286 MKTTTTTLLRNAPTLTLPLDSLQCGTLLQSLTNSKSFTQAQKLHAHIITCGTLLQNTYLSTKLAACYAACGRMPQAQLIFDQIVFKNSFLWNSMIRGYACSAGGNSSSRSLVLYREMLSFGQKADNFTYPFVLKACGDLLLREMGIRVHGLVVVDGLESDVYVGNSLISMYLKFGDMGTARLVFDKMPVRDLTSWNTMMSGYVKNGEAGDAFVVFDHMRRSGLVGDGTTMLALLSACGDLMDLKLGKAVHGYVVRNSGRLSNNEFVTNSMIDMYCNCDFISGARKLFEGLAVKDTVSWNSLISGYEKCGGAFQVLELFGQMFIGGAVPDEVTVISVLGACSRISALLLGSSVHSYLVKKGYGMNTAVGTSLISMYANCGSFLCAHRAFNEIPDKSLASWTVMVTGFGIHGKGREAISIFNEMLGKNITPDEGVFTAVLSACSHSGLVDEGKEIFYKMTRDYNVEPTTTHYSCLVDLLGRAGKLDEAYATIDNMKLKPNEDVWTALLSACRLHRNVKLAEISAQKLFEMDPNKVSGYVCLSNIYAAEKRWKDVQKVRKKVTKKRLRKPPSYSFFELNKMVHQFFAGDTSHQQSDDIYAKLKDLNEQLKKVGYMPDTSSVLYDVEAEVKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCVDCHTVMKMVSKLMSREIIMRDICRFHHFRDGICSCGGYW* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1120 702 Gene3D Tetratricopeptide repeat domain 4 103 IPR011990 GO:0005515
Lja3g1120 702 Gene3D Tetratricopeptide repeat domain 104 253 IPR011990 GO:0005515
Lja3g1120 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 124 IPR002885 -
Lja3g1120 702 TIGRFAM PPR: pentatricopeptide repeat domain 398 431 IPR002885 -
Lja3g1120 702 TIGRFAM PPR: pentatricopeptide repeat domain 194 226 IPR002885 -
Lja3g1120 702 TIGRFAM PPR: pentatricopeptide repeat domain 433 466 IPR002885 -
Lja3g1120 702 Gene3D Tetratricopeptide repeat domain 345 460 IPR011990 GO:0005515
Lja3g1120 702 Gene3D Tetratricopeptide repeat domain 461 639 IPR011990 GO:0005515
Lja3g1120 702 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 104 676 - -
Lja3g1120 702 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 40 99 - -
Lja3g1120 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Lja3g1120 702 Pfam PPR repeat family 191 237 IPR002885 -
Lja3g1120 702 Pfam DYW family of nucleic acid deaminases 610 702 IPR032867 GO:0008270
Lja3g1120 702 Pfam PPR repeat 268 288 IPR002885 -
Lja3g1120 702 Pfam PPR repeat 296 321 IPR002885 -
Lja3g1120 702 Pfam PPR repeat 165 190 IPR002885 -
Lja3g1120 702 Pfam E+ motif 579 602 IPR046849 -
Lja3g1120 702 Pfam Pentacotripeptide-repeat region of PRORP 414 509 IPR033443 -
Lja3g1120 702 Gene3D Tetratricopeptide repeat domain 254 344 IPR011990 GO:0005515
Lja3g1120 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 465 IPR002885 -
Lja3g1120 702 Pfam E motif 512 572 IPR046848 -
Lja3g1120 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Lja3g1120 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Lja3g1120 702 PANTHER - 104 676 - -
Lja3g1120 702 PANTHER - 40 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1120 Lja-Chr3 11684921 11687029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1120 75 702 Glycoside Hydrolase AT3G49170 36.421 1.56e-138 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1120 - - lja:Lj3g3v2888330.1 1257.66