Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1116 ATGGAAGCTTGCTGCAATCTTGAAGTGGATGTAAATGGAGAAGAGACCTTCATGGTGGACAAGAGGATTATTACTCAGTACTCAAACAAATTGGCTAAATTATTTGGAAAATCTGGTGATGCTACTGGAAAGCTTAAAGTCATTTTCCATGATTTTCCAGGAGGCGCAGAAGGTTTTGAGCTTATGTTAAGATTCTGTTATAACAATGGCACAGCTGATATAAGTCCTTCCAATTTGTTACTCTCACATTGTGCTGCTGAGTATATGGAAATGAATGAATCTGTTGCTGGTGTTTCTAACTTGTTGAAGCAAACAGAGAAATCACTCCAAGAGATTAACTATTGGTCATGGTCAGAACTTTTGATTGCTTTGAAGCAGTGCCAGGATTCAATAGATGCAGATTGTTCTGTGATGTTAGAGAGATGCTTGGATACTGTAGTGGGGAGGCTGGTTTTGGCCAGTGAAGCAAGCCCCTCTCCATCAACTTGTTCTACCGATAGTTTCGGGGTTCGGTATTCGTGTGATTCTAAAAGTACCGAGAGCATAAAGACAAGTTTCTCGCGTTCAACATGGTTCGATGATCTCCTGTTTTTGAATCCCTTGTTGGTTGCAATGTTGGTGAAGTCAATGTTTTCACATAAGTTGGACCATGTTGTCATCAGCAAGTTTCTTCTCTATTATCAGAAGGCAAAATTATTTACTGCTAGTGCGGAAGAGAAGTGTGAGATCATTGAAATGGTCATTGATATGCATTATTACATGGACCAGAGCTCTATTTCCTGCAAGACATTGTTCGGGATTCTTCGTGTTACTTTGAGTTTGAGCATAAGCAAAAGTAGCAGGAACAAGTTGGAGAATATGATTGGTTCCCACTTGGACCAAGCAACCTTGGACAATTTGCTTATTCCATCTCCCAATGGAATAAGCTACTTATATGATGTGAACCTTGTTCTGAGATTTTTGAAAGCATTCCTGCGTCAAGGAAATAGCCTACCCACTCCCATTCAGATGAGGAAAGTTGCTAGGTTGATTGATTTGTATTTAGCAGAAATAGCCCCTGATCCTTGTTTAAAAGCTTCAAAGTTCCTGGCTCTTGTCACAGCACTTCCAGATTCTGCCAGAGATTCTTATGATGAACTTTACCATGCAATGGACATGTATCTTGAGGTACACAGTCAATTATCACAAGAAGAAAGGGTGAAGATATGCTGTAGTTTAAATTATGAGAAGCTTTCATCTCAAGCTTGCCTGCACCTTTCTCAGAACACAAAATTTCCTTCAAAATCTGCAGTTCAAGCTTTAAGCTCTCAACAATCTAAGCTGAAAAACTTGCTACAAGTTACTCCTGGTTCAACTCCATACAACGATTCTCCGTGCAATTCCAAGGGGGTTGCTCAGAAGGGAAAGAAAGATAAAACCAGTGAACAGCTTGTGTTGTATGCTGACAATCATGATCTTTCAGCTGATAATGAGAAACTCAGAGCACATTTGCAAGGAATGCAGTGGAGGGTTATGGAATTGGAGAAAATCTGTAGGAAAATGCAAGTCCAGATGACAAAGATGACTAAATCGAAAGTATCAGGCAATAGTTATGCAAAATCTTTGCCCAAGCTATGCTCATGA 1623 0.3986 MEACCNLEVDVNGEETFMVDKRIITQYSNKLAKLFGKSGDATGKLKVIFHDFPGGAEGFELMLRFCYNNGTADISPSNLLLSHCAAEYMEMNESVAGVSNLLKQTEKSLQEINYWSWSELLIALKQCQDSIDADCSVMLERCLDTVVGRLVLASEASPSPSTCSTDSFGVRYSCDSKSTESIKTSFSRSTWFDDLLFLNPLLVAMLVKSMFSHKLDHVVISKFLLYYQKAKLFTASAEEKCEIIEMVIDMHYYMDQSSISCKTLFGILRVTLSLSISKSSRNKLENMIGSHLDQATLDNLLIPSPNGISYLYDVNLVLRFLKAFLRQGNSLPTPIQMRKVARLIDLYLAEIAPDPCLKASKFLALVTALPDSARDSYDELYHAMDMYLEVHSQLSQEERVKICCSLNYEKLSSQACLHLSQNTKFPSKSAVQALSSQQSKLKNLLQVTPGSTPYNDSPCNSKGVAQKGKKDKTSEQLVLYADNHDLSADNEKLRAHLQGMQWRVMELEKICRKMQVQMTKMTKSKVSGNSYAKSLPKLCS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1116 540 ProSiteProfiles BTB domain profile. 5 69 IPR000210 GO:0005515
Lja3g1116 540 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 11 540 - -
Lja3g1116 540 PANTHER OS12G0117600 PROTEIN 11 540 IPR043454 -
Lja3g1116 540 Pfam NPH3 family 190 416 IPR027356 -
Lja3g1116 540 SMART BTB_4 5 106 IPR000210 GO:0005515
Lja3g1116 540 ProSiteProfiles NPH3 domain profile. 189 440 IPR027356 -
Lja3g1116 540 SUPERFAMILY POZ domain 3 102 IPR011333 -
Lja3g1116 540 Gene3D Potassium Channel Kv1.1; Chain A 1 120 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1116 Lja-Chr3 11645242 11648661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1116 17 520 EF-hand Containing Proteins AT3G44820 26.978 1.06e-52 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1116 - - gmx:100784792 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1116 3 11645242 11648661 Lja3g1116 3 11645242 11648661 ECH