Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1115 ATGGCCCAGAGCTTTTCCATGGTGCTCAATTCGTCCTTCACTTCACATCCTATTTTTTGCAAACCTCAAAAGCTAATTATAAGAGGGCATAATCTACTTCAAGGGCACAGAATTAATTCCCCAATTCCATGCTATGCAAGCACTAGCAGCACAAGTGTGTCACAAAGAAAATCAGCCAATTACCAACCTAACATTTGGAATTACGATTATTTGCAGTCCTTAAAGCTTGGTTATGCGGATGCACATTATGAGGATATGGCTAAAAAGTTGCAAGAGGAAGTGAGAAGAATAATTAAGGATGACAAAGCAGAGATTTGGACTACACTAGAGCTTATTGATGATGTGAAACGCTTGGGTCTTGGCTATCACTTTGAAAAGGAGATAAGAGAGGTTCTTAACAAGTTTCTATCTTTGAACACATGTGTTCATAGAAGCTTGGATAAGACTGCTCTATGCTTTAGGCTCTTGAGAGAATACGGCTCCGATGTATCAGCAGATATTTTTGAGAGATTCTTGGACCAAAATGGTAATTTCAAGACAAGTCTTGTCAATAATGTAAAAGGAATGTTGAGTCTCTATGAGGCATCATTTCTTTCTTATGAAGGAGAACAGATTTTGGATAAGGCCAATGCTTTCACTAGCTTTCATCTCAAGAGCATCCATGAAGAAGATATAAATAACATTCTCTTAGAACAAGTGAATCATGCATTGGAGCTTCCACTACATCGTCGTATCCACAGGCTTGAGGCCCGGTGGTACACTGAGTCATATTCAAGAAGAAAGGATGCAAATTGGGTGTTGCTTGAAGCAGCTAAACTGGATTTCAACATGGTTCAATCAACACTGCAAAAAGATCTCCAAGAAATGTCAAGGTGGTGGAAGGGGATGGGGCTTGCCCCAAAGTTAAGCTTCAGTCGTGATAGATTAATGGAGTGCTTCTTTTGGACGGTTGGGATGGCTTTTGAGCCAAAATACAGTGATCTTCGCAAAGGTTTAACCAAAGTCACCTCTTTAATAACTACAATTGATGACATTTATGATGTGCATGGAACCTTGGAAGAATTAGAGCTTTTCACAGCAATTGTGGAAAGTTGGGACATTAAAGCAATGCAAGTTCTCCCAGAATACATGAAGATAAGCTTCTTAGCCCTCTACAACACAGTCAATGAATTGGCTTATGATGCACTTAGAGAACAAGGGCATGATATCCTACCCTACCTCACTAAAGCATGGTCTGATATGTTGAAAGCTTTCCTACAAGAAGCAAAGTGGTGCCGAGAAAAACACTTGCCAAAATTTGAGCATTATCTCAATAATGCTTGGGTCTCAGTGTCTGGTGTAGTTATACTAACTCATGCCTATTTCTTGCTGAATCACAACACAACAAAGGAGGTACTTGAGGCCTTGGAAAATTACCATGCTCTGTTAAAAAGACCATCCATAATTTTTCGACTTTGCAATGATTTGGGTACATCAACGGCGGAGTTACAGAGAGGTGAAGTAGCAAATTCAATTTTATCCTGCATGCATGAAAATGATATTGGTGAAGAGAGTGCTCACCAACACATTCATAGTTTGCTTAATGAAACTTGGAAGAAGATGAATAGAGATAGGTTCATCCACTCACCTTTCCCAGAACCTTTTGTGGAAATAGCAACCAACCTAGCCAGAATTGCTCAGTGTACGTACCAAACTGGAGATGGGCATGGAGCCCCGGATAGTATAGCAAAGAATCGAGTCAAATCATTGATAATTGAACCCATTGTTCTCAATGGAGACATATATTAA 1788 0.3971 MAQSFSMVLNSSFTSHPIFCKPQKLIIRGHNLLQGHRINSPIPCYASTSSTSVSQRKSANYQPNIWNYDYLQSLKLGYADAHYEDMAKKLQEEVRRIIKDDKAEIWTTLELIDDVKRLGLGYHFEKEIREVLNKFLSLNTCVHRSLDKTALCFRLLREYGSDVSADIFERFLDQNGNFKTSLVNNVKGMLSLYEASFLSYEGEQILDKANAFTSFHLKSIHEEDINNILLEQVNHALELPLHRRIHRLEARWYTESYSRRKDANWVLLEAAKLDFNMVQSTLQKDLQEMSRWWKGMGLAPKLSFSRDRLMECFFWTVGMAFEPKYSDLRKGLTKVTSLITTIDDIYDVHGTLEELELFTAIVESWDIKAMQVLPEYMKISFLALYNTVNELAYDALREQGHDILPYLTKAWSDMLKAFLQEAKWCREKHLPKFEHYLNNAWVSVSGVVILTHAYFLLNHNTTKEVLEALENYHALLKRPSIIFRLCNDLGTSTAELQRGEVANSILSCMHENDIGEESAHQHIHSLLNETWKKMNRDRFIHSPFPEPFVEIATNLARIAQCTYQTGDGHGAPDSIAKNRVKSLIIEPIVLNGDIY* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1115 595 Gene3D Farnesyl Diphosphate Synthase 63 578 IPR008949 -
Lja3g1115 595 Pfam Terpene synthase family, metal binding domain 268 533 IPR005630 GO:0000287|GO:0010333|GO:0016829
Lja3g1115 595 Gene3D - 103 263 IPR036965 GO:0010333|GO:0016829
Lja3g1115 595 PANTHER OS04G0344100 PROTEIN-RELATED 48 589 - -
Lja3g1115 595 CDD Terpene_cyclase_plant_C1 56 587 IPR044814 GO:0010333|GO:0016102
Lja3g1115 595 PANTHER TERPENE SYNTHASE 12-RELATED 48 589 - -
Lja3g1115 595 SFLD Isoprenoid Synthase Type I 264 589 - -
Lja3g1115 595 Pfam Terpene synthase, N-terminal domain 65 237 IPR001906 GO:0010333|GO:0016829
Lja3g1115 595 SFLD Terpene Cyclase Like 1 C Terminal Domain 264 589 IPR034741 -
Lja3g1115 595 SUPERFAMILY Terpenoid synthases 264 588 IPR008949 -
Lja3g1115 595 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 62 262 IPR008930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1115 Lja-Chr3 11635581 11638917 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1115 K12742 K19968 gmx:100814880 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1115 3 11635581 11638917 Lja3g1115 3 11635581 11638917 ECH