Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1080 ATGGCAGAACCGAAAGTGAAATACGATCGCCAACTCAGAATATGGGGCGAGCAGGGACAGGCAGCCCTTGAGAAATCTAGTATTTGTTTACTTAACTGTGGTCCTACTGGTTCTGAAACACTTAAGAACCTTGTTCTTGGTGGGGTTGGAAGCATCACGGTAGTCGACGGGTCCAAAGTTGAAGTGGGTGACCTCGGAAACAATTTTTTGGTGGATGAATCAAGCCTTGGGCAGTCAAAGGCAAAATGTGTATGCTCATTTCTTCAAGAGCTGAACGATGCAGTTAAAGCAAAATTTGTAGAAGAGTATCCAGAAACATTGATTGAGACAAATCCATCATTCTTTTCTCAATTTACTTTGGTTATTGCCACTCAGCTGGTGGAAAATTCAACAATAAAACTTGACCAAATCTGTAGGGAGGCGAATGTTATGTTGATCTTTGCCCGCTCCTATGGTCTTACAGGGTTTGTTCGAATTAGTTTGAAGGAACATACTGTTATTGAATCAAAGCCTGATCATTTCTTGGATGATCTCCGGTTAAATAATCCTTGGCCTGAACTCAAGAGGTTTGCAGAGGGCTTTGACTTGAATCTGCAAGATCCTGTTGCTCATAAGCACATACCATATGTTGTCATTCTCGTCAAGATGGCTGATGAGTGGGCCAAAAGCCATGGTGGTAGGCTTCCATCGACCAGAGAAGAAAAAAAAGAATTCAAGGAGCTTCTTAAGGCTGGGATGGTTGCACAAGATGAAGATAATTATAAAGAAGCTATTGAGTCCTCATTCAAAGTATTTGCTCCCCGAGGAATTAGTTTGGAGTTACAGCAGATACTAAATGATAGTTCTGCTGAAGTGGACTCTAATTCATCAGACTTTTGGGTGATGGTGGCAGCTCTAAAGGACTTCATTACAAATGAGGGTGGTGGGGAGACACCTCTTGAAGGATCTATACCAGATATGACTTCTTCTACTGAGCAATATGTGAATTTGCAAAATATCTATCAGGCTAAGTCCGAGGCTGACTTTCTTGTAATAGAACGACTGGTGAAAAGCACCTTGAAGAAAATTGGTAGAGATTCAAATAGCATTCCAAGGGCAACAATTAAAAGCTTTTGCAAAAATGCAAGAAAACTCAAAGTTTGCAGGTACCGTTTGATTGAAGATGAGTTTAATTTTCCAAACCTGTCGGAGTTACAGAAGTACCTAACTGATGAAGATTACAGCATTGCTGTGGGAATTTATATTTTGCTTCGTGCGGTTGATCGGTTTGCTGCTAATTACAACAGTTTTCCTGGACAGTTTGACAGCGCAATGGATGAGGATATATCTCGATTAAAGAGCACAGCAATTGGCCTACTTAATGACTTGGGATGCAATGGTGCCACATTGGCTGAGGACCTTATCAATGAGATGTGTCGATTTGGTGCTGCGGAGCTTCATGCTGTTGCTGCTTTGGTTGGAGGAATTGCTTCACAAGAAGTGATCAAGCTCATAACAAGGCAATTTGTACCAATGTCCGGAACCTTCATATTCAACGGCATTGACCACAAATCACAGATATTGTCACTGTAA 1572 0.4141 MAEPKVKYDRQLRIWGEQGQAALEKSSICLLNCGPTGSETLKNLVLGGVGSITVVDGSKVEVGDLGNNFLVDESSLGQSKAKCVCSFLQELNDAVKAKFVEEYPETLIETNPSFFSQFTLVIATQLVENSTIKLDQICREANVMLIFARSYGLTGFVRISLKEHTVIESKPDHFLDDLRLNNPWPELKRFAEGFDLNLQDPVAHKHIPYVVILVKMADEWAKSHGGRLPSTREEKKEFKELLKAGMVAQDEDNYKEAIESSFKVFAPRGISLELQQILNDSSAEVDSNSSDFWVMVAALKDFITNEGGGETPLEGSIPDMTSSTEQYVNLQNIYQAKSEADFLVIERLVKSTLKKIGRDSNSIPRATIKSFCKNARKLKVCRYRLIEDEFNFPNLSELQKYLTDEDYSIAVGIYILLRAVDRFAANYNSFPGQFDSAMDEDISRLKSTAIGLLNDLGCNGATLAEDLINEMCRFGAAELHAVAALVGGIASQEVIKLITRQFVPMSGTFIFNGIDHKSQILSL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1080 523 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 2 522 IPR045886 -
Lja3g1080 523 Gene3D - 351 523 - -
Lja3g1080 523 Gene3D - 2 268 - -
Lja3g1080 523 Pfam ThiF family 8 501 IPR000594 -
Lja3g1080 523 PIRSF APP-BP1 1 523 IPR030667 GO:0019781|GO:0045116
Lja3g1080 523 CDD APPBP1_RUB 7 521 - -
Lja3g1080 523 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 7 521 IPR035985 GO:0008641
Lja3g1080 523 PANTHER NEDD8-ACTIVATING ENZYME E1 REGULATORY SUBUNIT 2 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1080 Lja-Chr3 11214091 11220633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1080 7 78 EF-hand Containing Proteins AT2G30110 35.065 1.37e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1080 K04532 - gmx:100793799 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1080 3 11214091 11220633 Lja3g1080 3 11214091 11220633 ECH