Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1079 ATGAACACCGGAAACAAAACGCGCGTGGCGGCGGCATTCACGATCGCTGCTTTAGCAGCTACCATCATCTCCATCTTCTTCACCGCACGACGACGCCGTAACCACCGGCACGAGTCCCCTCCGAGCTCGTGCTACTCACATTCCGAACGGAAGCCAAAGTGCGCGTTCAAGCGTGTCTTGGCAGATAACTCCTACGCTCCATTCAAACACTTGAGCCTCAACGATGAGAATGGTTCGGATTTGCATCCGTTTGAGGCAGAGATTACGGCATTGGTAAGAAGTCCTCAGCCGGAAATTGAACTTAGTGATGATTTTGAGGTTGTGGACTTGGAGACGAATGATTCGTATGTTTGGGTCGATACAGAGGTACTGTTAAAGGAACTGGTCAATGAATTGAGCAAGGAGAAGTTCTTTGCCGTGGACACAGAACAACATAGCTTACACTCTTTTTTAGGCTTTACAGCATTAGTTCAGATTTCTACACAGAAGAAAGATTATTTGGTTGACACAATTGCTCTGCATGATTCTATGGGAATCCTTCGCCCAGTTTTTGCTAATCCTTCCATTTGTAAAGTGTTCCATGGAGCTGACAATGATATTCTCTGGCTACAGAGGGACTTCCATATTTATGTTGTTAATCTTTTTGATACTTCTAAGGCATGTGAAGTGCTTTCAAAACCACAGAAATCACTTGCTTATTTGCTAGAAACTTACTGTGGCGTGGTGACAAATAAATTATTACAGCGTGAAGACTGGAGACAGCGCCCTCTCTCAGCAGAAATGTTACATTATGCACTAACAGATGCACACTATCTGTTGTATATTGCAAACTGTATGATCAATGAACTCAGACAACTTGACAACGAAAACTCTGGTTCTGATGATAAAATCCAGTTTGTCCTCGAGGCTTGTCGGCGTTCAAACATGATCTGTTTACAACTTTTCACAAAGGATATTGAAGCTTCACCTGGAGAATCTTCTGTATTATCATTATTTTCTCGTCATGTGAGCAGCCAAGATGTGCCTTCAATTTCCAATGAAACCCAGTTTCAGCATACTGTGAGGCAGCTATGCACATGGAGAGATTTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTGTCAGATCAGGCAATTGGTGCTTTGGCAAGTCAGCCACCAGCAACTCACACTGAAATATACAAAACTATAGCTCGTACTGATATCAATTTTGAAATGGGTCTCAACTCTATCATCCCTTCCCCATCTCCTGTTGTTTGTAGCCACCTGAATGATATCTATGATCTGCTTGCGAACAAGCTGGTTAACCGTGGTGATATTTATTCAGTGATTATTCAGAAGTGTCTTGGTCAAAATGGGATTTGTCAACTTTCTATATTTAATTATGCTTTGCTGGTTAACGGTAGCCCGAGACCTACTTCAGTCCATAAGCATTCAAGACTAAAAAATCTTAAACAATTCTCCCGGAAGGCTTCTAGAGATTTGTTCGTTCAAAAGTTTTCTTGCAAAGCTCCTGTTTATCACAATTGTCGGATATATGCTAATGATGGAAGGCTACTTTGTTATTGTGATCGGAAGAAGCTTGAATGGTACCTCAGCCGGGATCTTGCTAAACTTGTTGATGACGATCCCCCAGGTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCGGAGGATGAAGACAATGACTTTTATATCCAGAGTAAGAAAAATATATGTGTTGGGTGTGGTGAAGGAAACCACTACTTGCGGTATCGAATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAAATTGCCCATGCTGCTGCAGAGAAGTATAAGAGAAAGATAGCTGCTGAATATGGGATTCCTCTCTATGTTCGTAGTGTAATTCATCCAAGGGAAAAGAATGAAGAACAAACTGAGGAGGGAGGTGTATCTCCATTACAATTACGAACAGCTGCAATGGCTCTTCTACGCCATGGACCAAGAATGCCTCTCGATCGCCGTGAAGAACTAACTGAGATTGTAAAAAGATATTATGGAGGGAGAGAAATAACTGAGGAAGATCTAGAAGGAGCTTTGCAAGTTGGCATGACTCCTCAAGAGAGAAGACGGTTCGAGAAGAAGAGGGGGTTTTCTTTTAAACATTCTACGGAGAGTACTGCTGCAGTGCCACAACTGGAGAATCATGTTGGTTGCGCTCCGGGTGATGAGGACGCATTGAATGATGATGCTCATGATGGAGAACTTTTGATGGAAAAAGATGATCTAGGGAACCCCTTATTAGCTTCTGACCTTGCAGTTGATGCAGCTATTTCAAATGGAGATTATAATGAAGGTGGGAACTCTTTAAATGTTGATAACAGTCTGAGCAGAACGCTACCAAATGGAGTTAGCGACTTGTTTGATCCCTCCAAATATGAAGAATCAACACTAGCGAAGCATAATTCGAAACTATCACTCTTGGGACATGGACCACACGGGAATTTAGTTGTAGAACATTTACTGAAGGAGTTTGGTGAAGAGGGTATTGGAGAGTTTTGTCAAAGATGGAGACAAGTATTTGTGGATGCTGTAAATCCACGATTTCTTCCTGGTGGTTGGGATGTGAAACACAGTGGACGAAGGGAGTTCGGCAAGTTCAGTGTATACAATACTGACAAAAGAGTGGATGCTGTTAGTATGTAG 2736 0.4218 MNTGNKTRVAAAFTIAALAATIISIFFTARRRRNHRHESPPSSCYSHSERKPKCAFKRVLADNSYAPFKHLSLNDENGSDLHPFEAEITALVRSPQPEIELSDDFEVVDLETNDSYVWVDTEVLLKELVNELSKEKFFAVDTEQHSLHSFLGFTALVQISTQKKDYLVDTIALHDSMGILRPVFANPSICKVFHGADNDILWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVVTNKLLQREDWRQRPLSAEMLHYALTDAHYLLYIANCMINELRQLDNENSGSDDKIQFVLEACRRSNMICLQLFTKDIEASPGESSVLSLFSRHVSSQDVPSISNETQFQHTVRQLCTWRDLMARIHDESLKYVLSDQAIGALASQPPATHTEIYKTIARTDINFEMGLNSIIPSPSPVVCSHLNDIYDLLANKLVNRGDIYSVIIQKCLGQNGICQLSIFNYALLVNGSPRPTSVHKHSRLKNLKQFSRKASRDLFVQKFSCKAPVYHNCRIYANDGRLLCYCDRKKLEWYLSRDLAKLVDDDPPGIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEIAHAAAEKYKRKIAAEYGIPLYVRSVIHPREKNEEQTEEGGVSPLQLRTAAMALLRHGPRMPLDRREELTEIVKRYYGGREITEEDLEGALQVGMTPQERRRFEKKRGFSFKHSTESTAAVPQLENHVGCAPGDEDALNDDAHDGELLMEKDDLGNPLLASDLAVDAAISNGDYNEGGNSLNVDNSLSRTLPNGVSDLFDPSKYEESTLAKHNSKLSLLGHGPHGNLVVEHLLKEFGEEGIGEFCQRWRQVFVDAVNPRFLPGGWDVKHSGRREFGKFSVYNTDKRVDAVSM* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1079 911 Pfam 3'-5' exonuclease 116 283 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lja3g1079 911 SUPERFAMILY Ribonuclease H-like 53 307 IPR012337 -
Lja3g1079 911 Gene3D HRDC domain 340 441 IPR044876 -
Lja3g1079 911 ProSiteProfiles HRDC domain profile. 347 427 IPR002121 GO:0003676
Lja3g1079 911 Gene3D - 24 321 IPR036397 GO:0003676
Lja3g1079 911 SUPERFAMILY HRDC-like 349 432 IPR010997 GO:0000166|GO:0044237
Lja3g1079 911 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 4 906 IPR045092 GO:0000175|GO:0000467
Lja3g1079 911 Pfam HRDC domain 354 394 IPR002121 GO:0003676
Lja3g1079 911 SMART 35exoneu6 116 284 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lja3g1079 911 PANTHER PROTEIN RRP6-LIKE 3 4 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1079 Lja-Chr3 11206892 11213914 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1079 K12951 - gmx:100791485 1358.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1079 3 11206892 11213914 Lja3g1079 3 11206892 11213914 ECH