Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1072 ATGGTCATAAACCTCTCTCCCTCTCCACCTTCACACTCCACTTCCATCATCCGTTTCGCAAACTCAAAGTCACCCATCTCTGAATCTTCCTTCAAGTTCAAAACCCACTTCTCAAAACCTCTTCTCTCTCCTTCATTTGCTTCCCCAAACGTGAAGAGCTTTGCCTGCAAGAAGCGGTTCTTACACGACAACAGCAGGTTCACACATGGAAACAGGGTGGATTTCAGGACCTGGGCTATTGCTGGATTCGATTATGGGAGCTTTGAGGGTCCTCAGTCTGTGCTTGAAGCTGCTGCAGTGTTGACAGCAATCATTGTTGTTCATGAGACCGGTCACTTTCTTGCTGCTTCTCTCCAAGGGATCCGTGTGAGTAAATTTGCTGTTGGGTTTGGTCCAATTTTAGCTAAGTTTAATGCAAACAATGTAGAGTATTCCATTAGAGCTTTTCCTCTTGGTGGGTTTGTGGGGTTTCCTGATAATGATCCAGATAGTGATATTCCTGTTGATGATGAGGATTTGCTTAAGAACAGACCAATATTGGATAGAGTCATAGTGGTTTCAGCTGGTGTTATTGCCAATATAGTTTTTGCATTAGTCATTATCTTTGTTCAAATCCTTGCTGTTGGTTTGCCTGTTCAAGAGGTCTTTCCTGGGGTGAGTGTGCCTGAAGTTCGACCCTTTTCGGCTGCTTCGCGAGATGGGTTGCTCTCCGGGGATGTGATAGTCGAAGTTAATGGAAATGAGTTTGTTAAACAAGGTCCTAGTGCTGTTTCTGAAGTTGTTGATGTGATCAAAAGGAACCCCAAGAGATATGTTTTGCTCAAGGTTAAGAGGGGGGAGCAGAACTTTGATATAGGTGTCACTCCTGATGAGAATTTTGATGGAACTGGTAAAATTGGAGTTCAGCTATCGCCGAATGTGAAGTTAGATAAGGTTAAACCGAAAAATGTGGTGGACGCTTTTAGCTTTACCGCGAAAGAATTCTGGGGTTTATCATCTAATGTTTTAGATGGCTTAAGGCAGACATTTTTAAACTTCTCACAGTCAGCTAGTAAGGTTTCAGGTCCTGTAGCCATTATTGCTGTTGGTGCAGAAGTTGCGCGGTCGAACATCGATGGTCTCTACCAGTTCGCCGCCATACTCAACATTAACCTTGCAGTTATAAACCTTCTTCCTTTGCCTGCTTTAGATGGGGGTTCGTTGGCGTTGATTCTTGTTGAGGCTGCCAGGGGAGGGAGAAAGCTACCTCTGGAAGTGGAGCAACGGATCATGTCGTCAGGAATTATGCTTGTTTTACTTCTGGGGTTATACCTTATTGTTCGTGATACCCTAAACCTCGATTTTATCAAAGAAATGTTGTAA 1362 0.4376 MVINLSPSPPSHSTSIIRFANSKSPISESSFKFKTHFSKPLLSPSFASPNVKSFACKKRFLHDNSRFTHGNRVDFRTWAIAGFDYGSFEGPQSVLEAAAVLTAIIVVHETGHFLAASLQGIRVSKFAVGFGPILAKFNANNVEYSIRAFPLGGFVGFPDNDPDSDIPVDDEDLLKNRPILDRVIVVSAGVIANIVFALVIIFVQILAVGLPVQEVFPGVSVPEVRPFSAASRDGLLSGDVIVEVNGNEFVKQGPSAVSEVVDVIKRNPKRYVLLKVKRGEQNFDIGVTPDENFDGTGKIGVQLSPNVKLDKVKPKNVVDAFSFTAKEFWGLSSNVLDGLRQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAVINLLPLPALDGGSLALILVEAARGGRKLPLEVEQRIMSSGIMLVLLLGLYLIVRDTLNLDFIKEML* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1072 453 SMART pdz_new 206 280 IPR001478 GO:0005515
Lja3g1072 453 CDD S2P-M50_PDZ_RseP-like 94 210 - -
Lja3g1072 453 Gene3D - 211 304 IPR036034 GO:0005515
Lja3g1072 453 Pfam Peptidase family M50 98 434 IPR008915 GO:0004222|GO:0006508
Lja3g1072 453 CDD PDZ_metalloprotease 206 289 - -
Lja3g1072 453 ProSiteProfiles PDZ domain profile. 208 279 IPR001478 GO:0005515
Lja3g1072 453 SUPERFAMILY PDZ domain-like 178 281 IPR036034 GO:0005515
Lja3g1072 453 Pfam PDZ domain 222 278 IPR041489 -
Lja3g1072 453 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 26 453 IPR004387 GO:0004222|GO:0006508|GO:0016021
Lja3g1072 453 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 26 453 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1072 - - lang:109351773 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1072 3 11145498 11147425 Lja3g1072 3 11145498 11147425 ECH