Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1056 ATGAATGTATTGACAAGAGTCTCCGGGTTGATTACAAATGCTCCATTTATCCTGAACGTTGATTGTGACATGTTTGTAAACAATCCAAAGATTGCTCTGCATGCACTCTGTATTTTGCTTGATCCTAAGGGAGCAAAAGAAGTTGCATTTGCTCAATTTCCCCAACAATTCTATGCTACACTGAAAGACGATCCTTTCGGAAATCAGATGGTGGTTTTATTTAAGTATCTCGCGGCTGGATTAGCAGGACTCCAAGGACCTTTCTACGGAGGAACAAACTGCTTTCATAGAAGAAAAGTCCTTTATGGTCTTTCTCCCAATAACGTACAAAAAGGAAACAACATACGGGAAGAGGAGTTAAAATACAAATTTGGAACTTCAAAGAAGCTTATAAGATCAGTTGTTCACGCTTTGAAAGGGAAGATATATTCGCCTCATGATATTGACATTTCAAAGACTATTGAGATAGGAAGTCAAGTTGCTAGTTATGGATATGAATATGGCACTAGTTGGGGTGAGCAGGTAGGTTGGATATATGGATCAATAACCGAAGACGTGCTTACTGGGCTTACAATTCATGAAAAAGGTTGGAGATCAGAATTGTGCACACCAGACCCAATTGCCTTCAAAGGTTGTGCTCCAGTTGGTGGATCAAGTTCAATGGCTCAACAAAAGAGATGGGCCACAGGATTGCTTGAGATTTTCTTCACCAAACACAACCCAATATTTAGGACCCTTTTTGGTGAGCTATATTTTAGGCAGTGTTTGGCATATATGTGGATAGTCAATTGGGGCTTGTGGCCTGTTGCAGAAGTAAGCTATGCTGGTCTCCTTGCCTATTGTGTCATTACCAACTCCAATTTCCTACCTCAGGGCTCGGGCACATGTATACCTGTAGCAATTTTTGTAATTTACACGGCGTATACTCTATTCGAATGCTTGGCATCAGAGCTGTCAATCCGTGCTTGGTGGAACAATCAAAGGATGTCAAGAATAACACCAATAAATGCTGGTTTTTGTGGATTTCTGAGTGTCCTACTTAAGTTGTTGGGAATATCAGATACTGTTTTTGAGATAACAAAGAAAGATGTACCCTCTTCAAGTGATGTTAAGGATGACAAGGATGCTAGTAGGTTTACCTTCGATGAGTCCCTAGTTTTTTTGCCAGGAACTACCATCTTGTTGTTGCAACTAACAGCAATGACTTTCAAGTTTTTAGGATTGCAATCATCAGCACCAAGTCAAGATGGGAAGGAATGTGGTTTGGGAGAGATGTTGTGTTGTGCATATTTGATAATATGCTATTGGCCATTTCTGAGAGGACTATTTGAGACAGGAAAATATAGGATTCCTTTTTCCACTGTATGCAAAGCAGCAACCATAACATTTATCTTTGTACACCTTTCTAGAAAGACAACTACTTACTAG 1428 0.3985 MNVLTRVSGLITNAPFILNVDCDMFVNNPKIALHALCILLDPKGAKEVAFAQFPQQFYATLKDDPFGNQMVVLFKYLAAGLAGLQGPFYGGTNCFHRRKVLYGLSPNNVQKGNNIREEELKYKFGTSKKLIRSVVHALKGKIYSPHDIDISKTIEIGSQVASYGYEYGTSWGEQVGWIYGSITEDVLTGLTIHEKGWRSELCTPDPIAFKGCAPVGGSSSMAQQKRWATGLLEIFFTKHNPIFRTLFGELYFRQCLAYMWIVNWGLWPVAEVSYAGLLAYCVITNSNFLPQGSGTCIPVAIFVIYTAYTLFECLASELSIRAWWNNQRMSRITPINAGFCGFLSVLLKLLGISDTVFEITKKDVPSSSDVKDDKDASRFTFDESLVFLPGTTILLLQLTAMTFKFLGLQSSAPSQDGKECGLGEMLCCAYLIICYWPFLRGLFETGKYRIPFSTVCKAATITFIFVHLSRKTTTY* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1056 475 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 1 473 - -
Lja3g1056 475 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 2 108 IPR029044 -
Lja3g1056 475 Pfam Cellulose synthase 110 464 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja3g1056 475 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1056 Lja-Chr3 10946226 10950471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1056 1 469 Glycosyltransferase AT2G32540 42.857 6.03e-126 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1056 - - lja:Lj3g3v2921120.1 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1056 3 10946226 10950471 Lja3g1056 3 10946226 10950471 ECH