Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1055 ATGGCCAACCCGAACTCTCTCCCCCTTTATGAAAAACATTGGTACAAGCACACTCATAAAAGGGTTCTTGATAGTTTGCTTTTAATCCTTCTATTGTTGTTGCTAGGTTACCGACTTATCTCTGTGAACTACTACTCTTTCCCTTGGTTTGCTGCCTTCGCATGCGAATCATGGTTCACCATCTCTTGGATTGTCACTGTCTCCATTCAATGGAATCCTGCAAAAGTCCAAACTTACCCAGATCGCCTATTGCAAAGGGTGGAACATGAAGAACTTCCACCAGTGGACATGTTTGTGACAACAGCAGATGCTGACCTTGAACCACCAATTCTGACAGTGAACACTGTGTTGTCTCTGTTGGCACTTGATTATCCAGCTCAGAAGCTAGCTTGTTATGTTTCTGATGATGGGTGTTCCCCTCTCACCTTCTATGCTCTTCAGGAAGCCTCCAAATTTGCAAAACTTTGGGTACCTTTCTGCAAGAAGTACAACGTGCAAGTCAGAGCTCCATTCAGATACTTCTGTGATGAGAGCACAACCACAATCCAAAACTCAACATCAGAATTCAGACAAGATTGGTCACATATGAAGGATTTGTATGACAGCCTCAGTCGCAGAATAGAAGATGCGGCCCGGAGAACAATTCCATGCAAGGAAGAATTTGAGGTTTTCTTAAACACTGAGAGGAAAAATCATCCAACCATAATTAAGGTTATATGGGAGAACACTGGAAGCATTGATGATGGAGTGCCCCATTTGATCTACATATCTAGAGAGAAGAGGCCAAAACAGCCACACCATTTCAAAGCAGGTGCAATGAATGTGTTGACAAGAGTCTCCGGGTTGATTACAAATGCTCCTTTTATGCTGAACGTCGACTGTGACATGTATGTAAACAATCCAAAGATTGTTCTGCATGCACTGTGCATTTTGCTTGATCCTAAGGGAGATAAAGAAGTTGCATTTGCTCAATTTCCCCAACAATTCTATGGTACACTGAAAGACGATCCTTTTGGAAATCAGATGGTGATTTTATTTAAGTATTTGGGGGCTGGAATCGCAGGACTCCAAGGGCCTTTCTACGGGGGAACAAATTGCTTCCATAGAAGAAAGGTTATTTATGGATTTTCTCCAAATTACGTAGAAAAAGGAAACAACATACTAGAAGAGGAGTTAAAATACAAATTTGGAACTTCAAAGGAGTTTATAAAATCAGTTGTTCATGCTTTGAAAGGGTGGATATATTCACCACATGATATTAACATTTCAAAGACTATTGAGATAGCAAGTCAAGTTGCTGGTCATGGATATGAATACGGCACTAGCTGGGGTGACCAGATAGGATGGATATATGGATCAATAAATGAGGACGTATTAACTGGGCTTACAATTCATGAAAAAGGTTGGAGATCAGAAAATTGCGCTCCAAGCCCAGTTGGCTTCATAGGCTGTGCTCCGGTTGGTGGCCCAAGTTCAATGGCCCAACAAAAGAGATGGGCCACAGGATTGCTTGAGATTTTCTTTACCAAACATTGTCCAATTTTTGGGATCCTTTTTGGTAAGCTCTATTTTAGGCAATGTTTGGCATATATGTGGATAATCAATTGGGGCTTGTGGCCTGTTGCAGAAGTAAGTTATGCTGGTCTCCTTGCCTATTGTGTCATTACCAACTCCAGTTTTCTACCTCAGGACTTGGGCATCTGTATCCATGTTGCAATTTTTGTAATTCACATGGTGTATACTCTGTATGAATGCTTGGAATCAGAGCTGTCAATTCGAGCTTGGTGGAACAATCAAAGGATGTCAAGAATAACACCAATGAATGCTGGTTTTTGTGGATTTCTGAGTGTCCTACTTAAGTTGTTGGGAATATCTGATACAATTTTTGAGATAACAAAGAAAGACAAGCCCTATTCAAATGATGTTAATGATGATAGGGATGCTGGTAGGTTTACCTTTGATGAGTCCCTAGTTTTTTTGCCGGGAACTACCATCTTGTTGCTGCAACTAACAGCAATGACTTTCAAGCTTTTGGGATTGCAACCATCATCAACACCAAGTCAAAGTGGGAAAAATGGATGTGGATTGGGAGAGTTGTTCTGTTGTGCATATTTGATAATATGCTTTTGGCCATTTCTGAGAGGGCTATTTGAGACAGGAAAGTATAGGATTCCCCGATCCACTGTATGCAAAGCAGCAACAATAACATTTATCTTTGTACACCTTTCTAGAAGGGCAACTAACTACTAG 2250 0.4093 MANPNSLPLYEKHWYKHTHKRVLDSLLLILLLLLLGYRLISVNYYSFPWFAAFACESWFTISWIVTVSIQWNPAKVQTYPDRLLQRVEHEELPPVDMFVTTADADLEPPILTVNTVLSLLALDYPAQKLACYVSDDGCSPLTFYALQEASKFAKLWVPFCKKYNVQVRAPFRYFCDESTTTIQNSTSEFRQDWSHMKDLYDSLSRRIEDAARRTIPCKEEFEVFLNTERKNHPTIIKVIWENTGSIDDGVPHLIYISREKRPKQPHHFKAGAMNVLTRVSGLITNAPFMLNVDCDMYVNNPKIVLHALCILLDPKGDKEVAFAQFPQQFYGTLKDDPFGNQMVILFKYLGAGIAGLQGPFYGGTNCFHRRKVIYGFSPNYVEKGNNILEEELKYKFGTSKEFIKSVVHALKGWIYSPHDINISKTIEIASQVAGHGYEYGTSWGDQIGWIYGSINEDVLTGLTIHEKGWRSENCAPSPVGFIGCAPVGGPSSMAQQKRWATGLLEIFFTKHCPIFGILFGKLYFRQCLAYMWIINWGLWPVAEVSYAGLLAYCVITNSSFLPQDLGICIHVAIFVIHMVYTLYECLESELSIRAWWNNQRMSRITPMNAGFCGFLSVLLKLLGISDTIFEITKKDKPYSNDVNDDRDAGRFTFDESLVFLPGTTILLLQLTAMTFKLLGLQPSSTPSQSGKNGCGLGELFCCAYLIICFWPFLRGLFETGKYRIPRSTVCKAATITFIFVHLSRRATNY* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1055 749 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 197 378 IPR029044 -
Lja3g1055 749 SUPERFAMILY Nucleotide-diphospho-sugar transferases 112 538 IPR029044 -
Lja3g1055 749 Pfam Cellulose synthase 95 384 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja3g1055 749 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 746 - -
Lja3g1055 749 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 2 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1055 Lja-Chr3 10934075 10941610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1055 8 743 Glycosyltransferase AT2G32540 47.832 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1055 - - gmx:100500469 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1055 3 10934075 10941610 Lja3g1055 3 10934075 10941610 ECH