Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1038 ATGGTGAAGAATCAGAAAGCAGATCTAGGCCGAGCCTTGGTGCGGCAACACAACCAGATGGTGCAGCAAACCAAGGAGAAAGGTCGCTTCTATCGGAAGAAGGTTCTCGAATCCTACACCGAAGTCTCCGATATCGACGCCATCATCGAACAAAACGATGAACCGAATCTCGATTTCCCTCCCTCTGTTGCTCCTCCCACCGTCCTCATCAACCTGGACCGAGACTCTGGCTCTAGCGTTGCCACGCCTGAAGAATCGAGGAAGCTGCGGAAGATTGAGGAAGCTCAACATGCTAGCAGTCTCCGAGTTCCACGCAGGCCGGCGTGGAGTGCTGAAATGTCCGCGGACCAGCTTCATGCCAATGAAACACAGTCTTTCTTGACCTGGCGTCGCAGCCTAGCGAGGCTTGAGGACAATAAGAGGCTTGTCCTTACTCCGTTTGAGAAAAATCTTGACATCTGGAGACAGCTCTGGCGGGTTGTTGAGCGTAGTGATTTGCTTGTTATGGTTGTTGATGCACGAGATCCACTATTCTATCGCTGCCCTGACCTTGAGGCATATGCTAGAGAGGTTGATGAGCATAAGCGCACATTGCTTTTGGTTAACAAGGCAGATCTTTTACCTGCTTCTATCAGGGAGAAATGGGCAGAATATTTCCGTGCTCATGATATTCTCTTCATCTTCTGGTCAGCTAAAGCTGCTACTGCAACTCTGGAAGGCAAAAAGCTTGGTTCATCATGGGAGGCTGATAATTTGGGGAGAACTGATAACCCAGACACAAAGATATATAGAAGAGATGAACTTTTGGGCCGCTTGCAATCAGAGGCAGAAGAGATAGTAGAACGCAGGAGAAATTCAGGCTCCTCTGATACAGGGTCTTCTTCCATTAAGTCCTCTAGTGAAAGTGCTTCTGGTAGTTCACCGTCAAGTAGTGTCACTGTGGGATTTGTTGGATATCCTAATGTGGGTAAGAGTTCAACTATCAATGCTTTGGTTGGTGGAAAGAAGACTGGTGTCACGTCTACCCCAGGGAAAACAAAGCACTTTCAGACATTAATTATTTCTGACAAACTGACCCTTTGTGATTGTCCCGGATTAGTTTTTCCATCTTTCTCAAGCTCAAGATACGAGATGATTGCTTGTGGGGTGTTGCCTATTGATAGGATGACTGAACACAGGGAAGCTGTCCAAGTTGTAGCTGATAGAGTTCCAAGACATGTCATAGAGGGGGTTTATAAGATCACTCTTCCTAAACCCAAGTCATACGAGTCCCAATCCCTCCCCCCTCTTGCATCTGAACTCTTGAGAGTATACTGTGCTTCTCGTGGGTATGTCGCCTCTAGTGGACTGCCTGATGAAACTAAGGCTGCTCGTCAGATACTGAAAGATTACATTGATGGGAAGGTGCCGCACTATGAAATGCCCCCTGGTGTGTCGAGTGAGGAACAAGCTTTGGAAGATCCCACTGGACATGACTCAGATGACTTGCACGACTCGGATTTGTCTGGTATTGAAGATTCTTTGGACGGTGAGAGTGAACAAGCTCCAAATCTTGAACACGTATTGGATGACCTCAAATCATTTGACCTGGCTAATGGAATTGCTTCACAGAAAGTTACTAAGAAGTCAAAGGCACCTCATAAACAGCATAAAAAGCCCCCGAGGCAAAAAAGTCATTCTTGGAGAGCAGGGAATGACGGTACTGATGGGACGCCAATTGCAAGATTCTTTCAGAAACCAGCTAATACTGGTCCAGTGAAGGTTTGA 1767 0.4697 MVKNQKADLGRALVRQHNQMVQQTKEKGRFYRKKVLESYTEVSDIDAIIEQNDEPNLDFPPSVAPPTVLINLDRDSGSSVATPEESRKLRKIEEAQHASSLRVPRRPAWSAEMSADQLHANETQSFLTWRRSLARLEDNKRLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDARDPLFYRCPDLEAYAREVDEHKRTLLLVNKADLLPASIREKWAEYFRAHDILFIFWSAKAATATLEGKKLGSSWEADNLGRTDNPDTKIYRRDELLGRLQSEAEEIVERRRNSGSSDTGSSSIKSSSESASGSSPSSSVTVGFVGYPNVGKSSTINALVGGKKTGVTSTPGKTKHFQTLIISDKLTLCDCPGLVFPSFSSSRYEMIACGVLPIDRMTEHREAVQVVADRVPRHVIEGVYKITLPKPKSYESQSLPPLASELLRVYCASRGYVASSGLPDETKAARQILKDYIDGKVPHYEMPPGVSSEEQALEDPTGHDSDDLHDSDLSGIEDSLDGESEQAPNLEHVLDDLKSFDLANGIASQKVTKKSKAPHKQHKKPPRQKSHSWRAGNDGTDGTPIARFFQKPANTGPVKV* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1038 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 422 IPR027417 -
Lja3g1038 588 CDD HSR1_MMR1 153 369 - -
Lja3g1038 588 Gene3D - 153 370 IPR027417 -
Lja3g1038 588 MobiDBLite consensus disorder prediction 279 311 - -
Lja3g1038 588 PRINTS GTP1/OBG GTP-binding protein family signature 314 334 IPR006073 GO:0005525
Lja3g1038 588 PRINTS GTP1/OBG GTP-binding protein family signature 360 375 IPR006073 GO:0005525
Lja3g1038 588 PANTHER GTPASE LSG1-1 1 557 - -
Lja3g1038 588 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 154 369 IPR030378 GO:0005525
Lja3g1038 588 PANTHER LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED 1 557 IPR043358 GO:0003924
Lja3g1038 588 MobiDBLite consensus disorder prediction 485 504 - -
Lja3g1038 588 MobiDBLite consensus disorder prediction 286 311 - -
Lja3g1038 588 Pfam 50S ribosome-binding GTPase 314 370 IPR006073 GO:0005525
Lja3g1038 588 MobiDBLite consensus disorder prediction 471 514 - -
Lja3g1038 588 MobiDBLite consensus disorder prediction 541 558 - -
Lja3g1038 588 MobiDBLite consensus disorder prediction 535 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1038 Lja-Chr3 10752610 10757053 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1038 K14539 - gmx:100817523 869.766