Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1020 ATGGGAGTTCCATCATTTTACAAATGGTTGGTGAACAAGTATCCCAACGTGGTGGGAAGCGCAACCCCAAATAGCAATGGGGTAGTGGAGTATGACAACTTCTACCTTGACATGAACTCCATAATACACCCATGTTTTCACCCTGAAGATCCAAACAGTTCACTGCCTTCAACGTTTGAAGAAGTGTTCAGAAACATGTTTGACTACATTGATCGCCTTGTTAACACTGTCAAGCCTCGCAAGCTCTTGTACATGGCGATCGATGGTGTGGCACCAAGGGCCAAGATGAATCAACAAAGAGCAAGGCGTTTTAGAACTGCTAAGGACAATGAAATCCGTGAAGCTGAAGAAGAGAGGCTCCGCAAGAAATTTGAAATGGAAGGCAAACAGGTTCTTCCTAAACAAGAATCAGAAGTGTCAGATCCTAATATAATAACACCAGGAACTGAGTTCATGCATGAACTCTCAATGGCTCTGAAGAATTACTTCTCTTCAAGAATAGCTAGTGATTCATTATGGAAAGATATCATGGTTATTCTTTCTGATGCTAATGTTCCTGGAGAAGGGGAACATAAGATTATGTCGTATATACGGGGACAACGTAACCTTCCAGGATATGATCCAAACACCACCCACTGCTTATATGGCTCAGATGCTGATCTTATAATGCTAGCTTTGGCAACACATGAGCCTCATTTCTCAATACTAAGAGAGGATGGCCTTATTCAGGGTCAGGTTCCACAAAATTCTGCTAAGCCTTTGTTTTTGCATATTTGGATTTTGAGGGAGTATCTTGAGTTGGACATGAAGATACAAGACCCTCCTAAAAATTGCCCAATTGAGTTTGAGCGGATAATTGATGATTTCATCTTTATCTGCTTTTTCGCTGGAAATGATTTTCTTCCCCACATGCCAACTTTTGAAATTCGCGAGGATGCTATTAATTTGCTAATGTATGTGTACAAAACCCAATTCAGCAAACTCGGAGGGTATCTTGTGGACATCACAAGGATTGGGGAAAAACATGCAGCTTTTGTCAAGTTATCCAGAGTTGAAAAGTTTATACTTATGGTTGGAGCTTATGAAGATAAAATCTTCAGTAAAAGATCCGAAAGCAGAGCAAAATATTTGAAGAAGCTTATCACTGATCATCAGCGTTCACAGGAAGAACAGAATGCTGCTAGTTTCTCAGATCTTGATGATGGTGGTACTTCTGATTGTGCTATTATTATTAAGAAGGCACCTGCAACAAAAAATTCATCCGGTTTTGTTGTCAATGAGGTTTCAGCTCCGTCAGCTGAAATTTTGCAGAACACAAAGGATTTAAAAGTGGAATTGGACAAATGTATGAAAGATAAAGGTGACTTGTTTAAGAGTGGAGAGTTCCGAATTGACAAGATAAAACTGGGAACTGCTGGATACAAACAAAGGTATTACAAAGAGAAGTTTTCGGTCGAGGGCTCAATTGACTTCGAGAAGAAGCGAAAAGATGTTGTTGAGAAGTACACTGAGGGACTCTTGTGGGTTCTTCAGTACTATTTTTCTGGAGTTGCTTCATGGTCATGGTTTTATCCATATCACTATGGACCATTTGCTTCAGACTTGAAGGGCATGGGTCAAGTGAAAGCAAATTTTGAGAAAGGTGTCCCCTTCTCACCTTTTGATCAGCTCCTAAGTGTTCTTCCTCCAAGGAGTGCTTATGCCCTTCCAAAATCATATTCAAAACTAATGATAGATGAGGACTCGAAAATATTACACTGGTATCCTCAGGATTTTGAAGTTGACACAGAAGGAAAACGTTACATGTGGCAGGCTATCTGCAAACTACCTTGGATAAATGAAAGAGAACTTTTGTCTGAAACAAGAGAAATCCAAAATGGATTATCTCAAAATGAAAAGATTAGAAATTCAGTCAAAGTTGATAGCTTGTTTGTTAGAAGCAGCAGCAACTTGTCAACAAAAATATGTTCCCTTTCTACTGACAATAACCAATCCAAGTTAGAAACCAACATAAGCGACAGAATTGGGGGTATCATCAGTCTTTGCCTTGAGGATGTGGATGTGGAGAGGCCTAACTTGGGGATGGAGATTTGTGACAAAAAGCAAGAAGATCATGCCCTGTGTGTCTATTACGAGTTGCCTGCTGGGGGTAGTAGTACCACTATGCATCATTTACTATCAGGTGTGAACATTCCTACAAAGACAATATATGAAAGTGAAATCAAGGAAACAGTTCTCTGGCATGAAAAACAGATGTACCAGACACATAACCGATTTGAGAGGAGTATTGCTTCCTCAAATGCAACAACTCCTCAAAACAGAAGAAGCTTTTCACTAAATGCACCTCCAGAAGTAATTTATAAAGGTGCTGGTGTTGGTTGGGGTTCTGGTAGAGGCAAGCCAAGCAACACTCCCACAATGCAAAGGCTTAATACTATGACAAATGAGAGAGTCTCACCATCCTTGTCTCCTAATCACCATCATCAAAGTTTGCAATCTCAGACAATGCCTTTTGGTAGGGGACGAGGGAGGCTTGGCCCGAATGCAAACAATGTAAATCCATGGAGGAGGGTTGATTCTAGTGGCAGTTCATACATGCCAAATCAACAGGTCTACCAAGTGAAAGATCACAATCGATGGTAG 2643 0.4045 MGVPSFYKWLVNKYPNVVGSATPNSNGVVEYDNFYLDMNSIIHPCFHPEDPNSSLPSTFEEVFRNMFDYIDRLVNTVKPRKLLYMAIDGVAPRAKMNQQRARRFRTAKDNEIREAEEERLRKKFEMEGKQVLPKQESEVSDPNIITPGTEFMHELSMALKNYFSSRIASDSLWKDIMVILSDANVPGEGEHKIMSYIRGQRNLPGYDPNTTHCLYGSDADLIMLALATHEPHFSILREDGLIQGQVPQNSAKPLFLHIWILREYLELDMKIQDPPKNCPIEFERIIDDFIFICFFAGNDFLPHMPTFEIREDAINLLMYVYKTQFSKLGGYLVDITRIGEKHAAFVKLSRVEKFILMVGAYEDKIFSKRSESRAKYLKKLITDHQRSQEEQNAASFSDLDDGGTSDCAIIIKKAPATKNSSGFVVNEVSAPSAEILQNTKDLKVELDKCMKDKGDLFKSGEFRIDKIKLGTAGYKQRYYKEKFSVEGSIDFEKKRKDVVEKYTEGLLWVLQYYFSGVASWSWFYPYHYGPFASDLKGMGQVKANFEKGVPFSPFDQLLSVLPPRSAYALPKSYSKLMIDEDSKILHWYPQDFEVDTEGKRYMWQAICKLPWINERELLSETREIQNGLSQNEKIRNSVKVDSLFVRSSSNLSTKICSLSTDNNQSKLETNISDRIGGIISLCLEDVDVERPNLGMEICDKKQEDHALCVYYELPAGGSSTTMHHLLSGVNIPTKTIYESEIKETVLWHEKQMYQTHNRFERSIASSNATTPQNRRSFSLNAPPEVIYKGAGVGWGSGRGKPSNTPTMQRLNTMTNERVSPSLSPNHHHQSLQSQTMPFGRGRGRLGPNANNVNPWRRVDSSGSSYMPNQQVYQVKDHNRW* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1020 880 PANTHER 5'->3' EXORIBONUCLEASE 1 775 IPR027073 -
Lja3g1020 880 MobiDBLite consensus disorder prediction 817 837 - -
Lja3g1020 880 Gene3D - 535 638 - -
Lja3g1020 880 Pfam XRN 5'-3' exonuclease N-terminus 1 239 IPR004859 GO:0003676|GO:0004527
Lja3g1020 880 CDD PIN_XRN1-2-like 34 265 - -
Lja3g1020 880 PIRSF Exonuclease_Xrn2 242 879 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lja3g1020 880 PIRSF Exonuclease_Xrn2 1 249 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lja3g1020 880 MobiDBLite consensus disorder prediction 853 880 - -
Lja3g1020 880 MobiDBLite consensus disorder prediction 817 880 - -
Lja3g1020 880 Pfam Xrn1 helical domain 280 740 IPR041412 -
Lja3g1020 880 Gene3D - 1 129 - -
Lja3g1020 880 Gene3D - 130 329 - -
Lja3g1020 880 PANTHER OS11G0157000 PROTEIN 1 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1020 Lja-Chr3 10465917 10470896 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1020 - - gsj:114379404 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1020 3 10465917 10470896 Lja3g1020 3 10465917 10470896 ECH