Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1011 ATGGCAAGTTTTTCAGTAGTCTCCTCTAATTTTGCCAGAAGGCTAGAAGGCAAGGTGGCGTTAATCACCGGCGGAGCAAGCGGAATCGGCGAGAGCACTGCAAGACTATTCTCAAAACATGGAGCCAAAGTGGTAATAGCTGACATTCAAGACGAGCTAGGCTACTCTCTTTGCAAAGACTTGAATCCATCATCACCATCATCATCATCATCTTCATCTGTTTCTTACGTCCACTGCGATGTGAGGGACGAAAGCCACATAGAAAATGCAGTGGACACAACCGTTTCCAGGCACGGCAAGCTAGACATCATGTACAACAATGCAGGCGTAACCGGCGTGTTCAATCCAAACATAATGGAGAATTCTAAATCAAACTTTGAAGAGGTCATTGGTGTGAACTTGACCGGCGTCTTCCTCGGGATCAAGCACGCGGCGAGGGTCATGGTCCCGGCTCGACGGGGCAGCATTATTGCCACCAGCAGCGTGTGCGGGCGCGTGGGTGGCATGGCGTCCCACGCGTATGCTTGTTCGAAACATGCCGTCGTGGGGCTGGTGAAAAACACCGCTGTGGAGCTTGGACAGTTTGGTATTCGTGTGAATTGTGTTTCTCCGTACGCGGTCCCGACGCCGCTGACTAGAAGGAACCTTGGATTTAAAGATGATGAGGAGTTTGGTGCGTTTTATTCAAATCTTAAAGGTGTTATTCTTAAGGATAAGGATATTGCTGAAGCTGCTCTTTATTTAGGAAGTGATGAGTCCAAGTATGTTAGTGGGCATGATCTTGTTGTGGATGGGGGATTCAGTGTTTTGAATTCTGGTTATTGTGTGTTTGGACAATCATAG 843 0.4804 MASFSVVSSNFARRLEGKVALITGGASGIGESTARLFSKHGAKVVIADIQDELGYSLCKDLNPSSPSSSSSSSVSYVHCDVRDESHIENAVDTTVSRHGKLDIMYNNAGVTGVFNPNIMENSKSNFEEVIGVNLTGVFLGIKHAARVMVPARRGSIIATSSVCGRVGGMASHAYACSKHAVVGLVKNTAVELGQFGIRVNCVSPYAVPTPLTRRNLGFKDDEEFGAFYSNLKGVILKDKDIAEAALYLGSDESKYVSGHDLVVDGGFSVLNSGYCVFGQS* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1011 280 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 161 189 IPR020904 GO:0016491
Lja3g1011 280 PRINTS Glucose/ribitol dehydrogenase family signature 148 164 IPR002347 -
Lja3g1011 280 PRINTS Glucose/ribitol dehydrogenase family signature 99 110 IPR002347 -
Lja3g1011 280 PRINTS Glucose/ribitol dehydrogenase family signature 174 193 IPR002347 -
Lja3g1011 280 PRINTS Glucose/ribitol dehydrogenase family signature 231 251 IPR002347 -
Lja3g1011 280 PRINTS Glucose/ribitol dehydrogenase family signature 195 212 IPR002347 -
Lja3g1011 280 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Lja3g1011 280 PANTHER MOMILACTONE A SYNTHASE 8 274 - -
Lja3g1011 280 Gene3D - 5 276 - -
Lja3g1011 280 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 8 274 - -
Lja3g1011 280 Pfam Enoyl-(Acyl carrier protein) reductase 24 268 - -
Lja3g1011 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 174 193 IPR002347 -
Lja3g1011 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 162 IPR002347 -
Lja3g1011 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 99 110 IPR002347 -
Lja3g1011 280 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 269 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1011 Lja-Chr3 10370213 10371319 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1011 14 269 Acyl Lipid Metabolism Gene Families AT3G46170 33.840 6.45e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1011 - - gmx:100810754 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1011 3 10370213 10371319 Lja3g1011 3 10370213 10371319 ECH