Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1010 ATGGCAAGTGTTTCTTCAGTCTCAGCTGCTCTTAGAAGGCTTGAGGGTAAGGTGGCTTTGATCACCGGTGGCGCGAGCGGAATCGGAGAAGCCACCGCAAGACTCTTCTCCAAGCATGGAGCTAAAGTGGTGATAGCAGATATCCAAGATGATTTGGGCCACTCTGTTTGCAGAGACTTGGAATCCGCTTCCTTCGTCCACTGCAACGTGACGAAGGAAGATGAGGTTGAAACCGCCGTGAACACGACGGTTTCCAAGCATGGAAAACTAGACATCATGTTCAACAACGCCGGCATATCCGGTGACAACAACATCAGCATCCTCAACAACACGAAATCAGATTTTGAGCAAGTTTTCAGTGTAAACGTTTTTGGTGCGTTTCTCGGAACGAAGCACGCGGCGAGGGTCATGGTCCCTGCTAGAAGGGGAAGCATAATTAACACGGCTAGTGTTTCTGGGTTAATCGGTGGCGCCACTCCACATGCCTACACGAGTTCAAAGCATGCGGTGGTGGGATTGATGAGGAACACGGCGGTGGAGCTTGGAGCTTACGGTGTTCGGGTGAATTGTGTGTCGCCTTATTTTATTCCAACGCCGATGGTTAAAAATTTCTTCAAGCTTGGTGAAGAGGATGAAGTTCCAAAGTTTTATTCTAATCTGAAAGGTGCTGATAGTGTACCAGAAGATGTGGCTGAAGCTGTTCTGTATTTGGGAAGTGATGAGTCTAAGTATGTTAGTGGTCACAATCTTGTGGTAGATGGGGGATTCACAGTGCTAAACAATGGATTTTGTGTGTTTGGACAATCTGTATGA 813 0.4748 MASVSSVSAALRRLEGKVALITGGASGIGEATARLFSKHGAKVVIADIQDDLGHSVCRDLESASFVHCNVTKEDEVETAVNTTVSKHGKLDIMFNNAGISGDNNISILNNTKSDFEQVFSVNVFGAFLGTKHAARVMVPARRGSIINTASVSGLIGGATPHAYTSSKHAVVGLMRNTAVELGAYGVRVNCVSPYFIPTPMVKNFFKLGEEDEVPKFYSNLKGADSVPEDVAEAVLYLGSDESKYVSGHNLVVDGGFTVLNNGFCVFGQSV* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1010 270 Gene3D - 2 266 - -
Lja3g1010 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Lja3g1010 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Lja3g1010 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Lja3g1010 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 258 IPR036291 -
Lja3g1010 270 Pfam Enoyl-(Acyl carrier protein) reductase 23 257 - -
Lja3g1010 270 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 263 - -
Lja3g1010 270 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Lja3g1010 270 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Lja3g1010 270 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Lja3g1010 270 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Lja3g1010 270 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Lja3g1010 270 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Lja3g1010 270 PANTHER MOMILACTONE A SYNTHASE 7 263 - -
Lja3g1010 270 CDD secoisolariciresinol-DH_like_SDR_c 13 257 IPR045309 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1010 Lja-Chr3 10364063 10365680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1010 14 258 Acyl Lipid Metabolism Gene Families AT1G62610 33.203 1.43e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1010 - - gmx:100782627 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1010 3 10364063 10365680 Lja3g1010 3 10364063 10365680 ECH