Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1009 ATGGCAAGTGGGTCTTCATTAATCTCAGTCTCAGCTGCTCTAATTAGAAGGCTTGAGGGTAAGGTGGCTTTGATCACCGGTGGCGCGAGTGGAATTGGTGAAGCCACTGCAAGACTCTTCTCCAAGCACGGAGCACAAGTAGTGATAGCAGATGTCCAGGATGATTTGGGCCAGTCACTTTGCAAAGACTTGAAATCCGCTTCCTTCGTCCACTGCAACGTGACAAAGGAAGATGAGGTTGAAACTGCTGTAAACACAACGGTTTCCAAGCATGGCAAACTAGACATCATGTTCAACAATGCCGGTATAACTGGTGCGAACAAAACCAACATACTTGACAACACGAAATCTGAGTTTGAGCAAGTTATCAACACTAACTTGGTTGGTGTCTTTCTTGGAACAAAGCATGCTGCTAGGGTGATGGTTCCTGCTCGAAGGGGAAGCATTATCAACACAGCTAGCATATGTGGATGCATTGGTGGTGCGGCTTCACATGCGTACACAAGTTCAAAGCATGGTGTAGTGGGGTTGATGAAAAACACAGCAGTGGAACTTGGAGCATTTGGCATTCGGGTGAATTGTGTGTCGCCTTATGTTGTTCCCACACCATTGGCTAAGACTTTCTTTAAGCTTGATGACGAGGGTGTTCAAGCGGTTTATTCTAACCTGAAAGGTGCTGATCTTGTGCCGAATGATGTGGCTGAAGCTGCTCTTTATCTGGGAAGTGATGAGTCCAAGTACGTTAGTGGTCACAACCTTGTGATAGATGGAGGAATCACGGTGGTTAACAATGGGTTTTGTGTGTTTAGGCAGTCTGTGTGA 822 0.4623 MASGSSLISVSAALIRRLEGKVALITGGASGIGEATARLFSKHGAQVVIADVQDDLGQSLCKDLKSASFVHCNVTKEDEVETAVNTTVSKHGKLDIMFNNAGITGANKTNILDNTKSEFEQVINTNLVGVFLGTKHAARVMVPARRGSIINTASICGCIGGAASHAYTSSKHGVVGLMKNTAVELGAFGIRVNCVSPYVVPTPLAKTFFKLDDEGVQAVYSNLKGADLVPNDVAEAALYLGSDESKYVSGHNLVIDGGITVVNNGFCVFRQSV* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1009 273 CDD secoisolariciresinol-DH_like_SDR_c 17 260 IPR045309 GO:0016616
Lja3g1009 273 Pfam Enoyl-(Acyl carrier protein) reductase 27 260 - -
Lja3g1009 273 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 11 266 - -
Lja3g1009 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 19 261 IPR036291 -
Lja3g1009 273 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Lja3g1009 273 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Lja3g1009 273 PRINTS Glucose/ribitol dehydrogenase family signature 92 103 IPR002347 -
Lja3g1009 273 PRINTS Glucose/ribitol dehydrogenase family signature 22 39 IPR002347 -
Lja3g1009 273 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Lja3g1009 273 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Lja3g1009 273 PANTHER MOMILACTONE A SYNTHASE 11 266 - -
Lja3g1009 273 Gene3D - 9 270 - -
Lja3g1009 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
Lja3g1009 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 IPR002347 -
Lja3g1009 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Lja3g1009 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1009 Lja-Chr3 10357958 10362093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1009 18 261 Acyl Lipid Metabolism Gene Families AT1G63380 33.333 3.89e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1009 - - gmx:100782627 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1009 3 10357958 10362093 Lja3g1009 3 10357958 10362093 ECH