Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1000 ATGGCCATGGCGTCGAGAAAGCATCGCAGTCGTGAAATGCTCTTCGACTCCGTCATCGCCCTCGTCATCATCCTCGTCGCCTGCGTCGATTTCTGCGACGGCGCCACCGTCGTGGACGTCTACCGCCTCATCCAGTACGACATGTCCGGCGTTCCCTTCGGATCTCGCCTTGCTAGCCTCAACCACCACGCTGCTTCTCTCCACTTCTCACCGCACGCCGATCTCTCTCGCACTGTCCTCCTCATACCTCTCCGTGAACTCAACATGTCCTTCGTCCAAGAATATATTGCTGAAAGCAAGCCTCTAGGGGGTTTAATATTTTTGCTGCCCCAGATGTTTCGTTTTGAAAACAAAGGTGGCACGAGAGGTAGTCATCAAGATGGGAGTAAAGAGCTGCTGAAGAATGCGTTGGATGAACTTGAACAAAGACTTATACACACCAACTTACCTTATCCTGTTTATTTTGCTTTTGAGGACGATCACATTGATGCTGTGTTGACTGATATCAAGAAAAATGATGCCACTGGTCAACCTGCTACTGCAACTACTGGCGGATACAAATTTGTTGTTTCAGCTCTGGAACCAAAGAAAGTTGCATCTCCACCCATTACTAATATTCAGGGATGGTTGGCAGGATTGAAGACAGATGATGATGCTCATCAGTTACCCACCATTGCGATAGTGGCATCATATGACACCTTTGGGGCTGCTCCTGCACTATCAATGGGAAGCGATAGTAATGGAAGTGGTATTGTGGCTCTTCTTGAAGTAGCTAGGTTGTTTTCTCTCTTATATTCTAATCCAAAGACACGAGGACAGTACAATCTACTGTTCGGGCTAACATCTGGTGGGCCATACAACTACAATGGAACATTTAAGTGGCTTCGGAGCTTTGATCAACGTCTACGTGAGAGCATTGACTATGCTATTTGCTTAGATAGTATCGGCTCATGGGAAAATGATCTGTGGATTCATGTATCCAAGCCTCCAGAAAATGCCTATATTAAGCAAATTCATGAAGATTTTTCAACTGTTGCAGGAGAGTTAGGCTTTAACGTGAATCTGAAGCATAAGAAAATAAACATTTCTAATCCCCGAGTAGCTTGGGAACATGAACAATTTTCAAGGCTGAGAGTTACTGCTGCTACCCTCTCTGAACTTTCTACTGCACCTGAATTGCTAGAAAGGACTGGTGGTTTGGTTGACAGCAGGCATTTTGTCAATGAGGATGCAGTTGTCAGAAGTGTGAAGTTGATTGCGGAGAGTCTTGCGAGACATATTTATGGACATCGAGGAAAGAACATCAATATCTTTGCAGACAACAGTAACTTGGCTGTTAATCCTTCTTATGTTAGATCATGGTTAGATGTTTTGTCCCAAACACCTCGAGTGGCACCATTTTTCTCCAAAGATGATCCTTTAGTCATGGCACTGAAAAAGGAATTAGAAGATCATACTGATGAAGTAAATCTTCAACGAGAAGTGCTAGATGGGGTGTTCACTTTCTACGATTCAACTAGGGCAAAGCTGAACATTTATCAGGTTGCGAGCGTTGCTTTTGACTTGTTGTTGCTTATAGTATTGGGGTCGTACTTGATTGTGCTCTTCACTTTCTTGTTCATCACAACTAGGGGTCTTGATGATCTAATCAGTTTGTTTCGGCGGCCTCCTTCTAGAAAAGTGAAAACTGCATAG 1695 0.4425 MAMASRKHRSREMLFDSVIALVIILVACVDFCDGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHADLSRTVLLIPLRELNMSFVQEYIAESKPLGGLIFLLPQMFRFENKGGTRGSHQDGSKELLKNALDELEQRLIHTNLPYPVYFAFEDDHIDAVLTDIKKNDATGQPATATTGGYKFVVSALEPKKVASPPITNIQGWLAGLKTDDDAHQLPTIAIVASYDTFGAAPALSMGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTFKWLRSFDQRLRESIDYAICLDSIGSWENDLWIHVSKPPENAYIKQIHEDFSTVAGELGFNVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPELLERTGGLVDSRHFVNEDAVVRSVKLIAESLARHIYGHRGKNINIFADNSNLAVNPSYVRSWLDVLSQTPRVAPFFSKDDPLVMALKKELEDHTDEVNLQREVLDGVFTFYDSTRAKLNIYQVASVAFDLLLLIVLGSYLIVLFTFLFITTRGLDDLISLFRRPPSRKVKTA* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1000 564 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Lja3g1000 564 PANTHER NICALIN 5 563 - -
Lja3g1000 564 SUPERFAMILY Zn-dependent exopeptidases 197 428 - -
Lja3g1000 564 CDD M28_nicalin_like 137 430 - -
Lja3g1000 564 PANTHER NICALIN 5 563 IPR016574 GO:0009966|GO:0016020
Lja3g1000 564 PIRSF Nicalin 1 559 IPR016574 GO:0009966|GO:0016020
Lja3g1000 564 Pfam Nicastrin 225 362 - -
Lja3g1000 564 ProSitePatterns EF-hand calcium-binding domain. 245 257 IPR018247 -
Lja3g1000 564 Coils Coil 475 495 - -
Lja3g1000 564 Gene3D Zn peptidases 128 423 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1000 7 562 EF-hand Containing Proteins AT3G44330 73.571 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1000 - - gmx:100778865 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1000 3 10271984 10285440 Lja3g1000 3 10271984 10285440 ECH